* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/tidystats.Rcheck’
* using R Under development (unstable) (2025-03-01 r87854)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘tidystats/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘tidystats’ version ‘0.6.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tidystats’ can be installed ... [8s/10s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/tidystats-00install.html' for details.
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘add_stats.Rd’ ‘count_data.Rd’ ‘describe_data.Rd’ ‘describe_data.r’
    ‘helper_functions.r’ ‘tidy_stats.R’ ‘tidy_stats.afex.r’
    ‘tidy_stats.brmsfit.r’ ‘tidy_stats.emmeans.R’ ‘tidy_stats.irr.r’
    ‘tidy_stats.lavaan.r’ ‘tidy_stats.lmerMod.r’ ‘tidy_stats.nlme.r’
    ‘tidy_stats.psych.r’ ‘tidy_stats.tidystats.r’
    ‘tidy_stats_to_data_frame.Rd’
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [16s/20s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [36s/46s] ERROR
  Running ‘testthat.R’ [35s/45s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(tidystats)
  This version of tidystats uses a new and improved way of structuring statistics. This breaks previous (major) versions of tidystats.
  > 
  > test_check("tidystats")
  [ FAIL 13 | WARN 50 | SKIP 0 | PASS 171 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_afex.R:226:3'): mixed simple model with random-slopes works ──
  `tidy_model` not equal to `expected_tidy_model`.
  Component "groups": Component 1: Component 2: Component 1: Component 2: Component 2: Component 4: Mean relative difference: 0.5109151
  Component "groups": Component 1: Component 2: Component 1: Component 2: Component 3: Component 3: Mean relative difference: 0.4755183
  Backtrace:
      â–†
   1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$mixed) at test_afex.R:226:3
   2.   └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)
  ── Failure ('test_afex.R:240:3'): mixed with expanded random effects terms works ──
  `tidy_model` not equal to `expected_tidy_model`.
  Component "groups": Component 1: Component 2: Component 1: Component 2: Component 2: Component 4: Mean relative difference: 0.5022773
  Component "groups": Component 1: Component 2: Component 1: Component 2: Component 3: Component 3: Mean relative difference: 0.1632772
  Component "groups": Component 1: Component 2: Component 1: Component 2: Component 4: Component 2: Mean absolute difference: 0.00112978
  Backtrace:
      â–†
   1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$mixed_expand_RE) at test_afex.R:240:3
   2.   └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)
  ── Failure ('test_afex.R:254:3'): mixed with random intercept plus random slope works ──
  `tidy_model` not equal to `expected_tidy_model`.
  Component "groups": Component 1: Component 2: Component 1: Component 2: Component 2: Component 4: Mean relative difference: 0.1374001
  Component "groups": Component 1: Component 2: Component 1: Component 2: Component 3: Component 3: Mean relative difference: 15.90515
  Component "groups": Component 1: Component 2: Component 1: Component 2: Component 4: Component 2: Mean relative difference: 0.8018262
  Backtrace:
      â–†
   1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$mixed_random_interecept) at test_afex.R:254:3
   2.   └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)
  ── Failure ('test_afex.R:268:3'): mixed with treatment contrasts checked works ──
  `tidy_model` not equal to `expected_tidy_model`.
  Component "groups": Component 1: Component 2: Component 1: Component 2: Component 2: Component 4: Mean relative difference: 54.71549
  Component "groups": Component 1: Component 2: Component 1: Component 2: Component 3: Component 3: Mean relative difference: 2.03698
  Component "groups": Component 1: Component 2: Component 1: Component 2: Component 4: Component 2: Mean relative difference: 0.9587316
  Backtrace:
      â–†
   1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$mixed_contrast) at test_afex.R:268:3
   2.   └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)
  ── Failure ('test_lme4.R:10:3'): lme4 works ────────────────────────────────────
  `tidy_model` not equal to `expected_tidy_model`.
  Length mismatch: comparison on first 5 components
  Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 1: Component 3: Mean relative difference: 0.3035495
  Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 2: Component 3: Mean relative difference: 0.6992413
  Component "groups": Component 2: Component 2: Component 2: Component 2: Component 1: Component 3: Mean relative difference: 0.03292514
  Component "groups": Component 2: Component 2: Component 2: Component 2: Component 2: Component 3: Mean relative difference: 0.06476622
  Component "groups": Component 3: Component 2: Component 1: Component 2: Component 1: Component 2: Component 2: Component 2: Mean relative difference: 0.2110933
  Component "groups": Component 3: Component 2: Component 1: Component 2: Component 1: Component 2: Component 3: Component 3: Mean relative difference: 0.1742998
  Component "groups": Component 3: Component 2: Component 1: Component 2: Component 2: Component 2: Component 2: Component 2: Mean relative difference: 0.03292566
  Component "groups": Component 3: Component 2: Component 1: Component 2: Component 2: Component 2: Component 3: Component 3: Mean relative difference: 0.03404613
  ...
  Backtrace:
      â–†
   1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$lme4) at test_lme4.R:10:3
   2.   └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)
  ── Failure ('test_lme4.R:21:3'): lme4 ML works ─────────────────────────────────
  `tidy_model` not equal to `expected_tidy_model`.
  Length mismatch: comparison on first 4 components
  Component "groups": Component 1: Component 2: Component 1: Component 2: Mean absolute difference: Inf
  Component "groups": Component 1: Component 2: Component 2: Component 2: Mean absolute difference: Inf
  Component "groups": Component 1: Component 2: Component 3: Component 3: Mean absolute difference: Inf
  Component "groups": Component 1: Component 2: Component 4: Component 3: Mean absolute difference: Inf
  Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 1: Component 3: Mean relative difference: 0.2715963
  Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 2: Component 3: Mean relative difference: 0.6169572
  Component "groups": Component 2: Component 2: Component 2: Component 2: Component 1: Component 3: Mean relative difference: 0.03051347
  Component "groups": Component 2: Component 2: Component 2: Component 2: Component 2: Component 3: Mean relative difference: 0.06009589
  ...
  Backtrace:
      â–†
   1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$lme4_ML) at test_lme4.R:21:3
   2.   └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)
  ── Failure ('test_lme4.R:30:3'): lme4 slopes works ─────────────────────────────
  `tidy_model` not equal to `expected_tidy_model`.
  Length mismatch: comparison on first 5 components
  Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 1: Component 3: Mean relative difference: 0.02843459
  Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 2: Component 3: Mean relative difference: 0.05767774
  Component "groups": Component 2: Component 2: Component 2: Component 2: Component 1: Component 3: Mean relative difference: 0.04953387
  Component "groups": Component 2: Component 2: Component 2: Component 2: Component 2: Component 3: Mean relative difference: 0.1015214
  Component "groups": Component 3: Component 2: Component 1: Component 2: Component 1: Component 2: Component 2: Component 2: Mean relative difference: 0.0338931
  Component "groups": Component 3: Component 2: Component 1: Component 2: Component 1: Component 2: Component 3: Component 3: Mean relative difference: 0.03278199
  Component "groups": Component 3: Component 2: Component 1: Component 2: Component 2: Component 2: Component 2: Component 2: Mean relative difference: 0.7299958
  Component "groups": Component 3: Component 2: Component 1: Component 2: Component 2: Component 2: Component 3: Component 3: Mean relative difference: 2.703646
  ...
  Backtrace:
      â–†
   1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$lme4_slopes) at test_lme4.R:30:3
   2.   └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)
  ── Failure ('test_lme4.R:42:3'): lme4 anova works ──────────────────────────────
  `tidy_model` not equal to `expected_tidy_model`.
  Component "groups": Component 1: Component 2: Component 1: Component 2: Component 4: Component 3: Mean relative difference: 0.06925136
  Backtrace:
      â–†
   1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$anova_lme4) at test_lme4.R:42:3
   2.   └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)
  ── Failure ('test_lmerTest.R:12:3'): lmerTest 1 works ──────────────────────────
  `tidy_model` not equal to `expected_tidy_model`.
  Length mismatch: comparison on first 5 components
  Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 1: Component 3: Mean relative difference: 0.01568063
  Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 2: Component 3: Mean relative difference: 0.03160713
  Component "groups": Component 2: Component 2: Component 1: Component 3: Component 2: Component 2: Component 1: Component 2: Component 1: Component 3: Mean absolute difference: 0.065551
  Component "groups": Component 2: Component 2: Component 2: Component 2: Component 1: Component 3: Mean relative difference: 0.05062248
  Component "groups": Component 2: Component 2: Component 2: Component 2: Component 2: Component 3: Mean relative difference: 0.1038076
  Component "groups": Component 3: Component 2: Component 1: Component 2: Component 1: Component 2: Component 2: Component 2: Mean relative difference: 0.02476591
  Component "groups": Component 3: Component 2: Component 1: Component 2: Component 1: Component 2: Component 3: Component 2: Mean relative difference: 0.06337346
  Component "groups": Component 3: Component 2: Component 1: Component 2: Component 1: Component 2: Component 4: Component 3: Mean relative difference: 0.02416733
  ...
  Backtrace:
      â–†
   1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$lmerTest1) at test_lmerTest.R:12:3
   2.   └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)
  ── Failure ('test_lmerTest.R:25:3'): lmerTest 2 works ──────────────────────────
  `tidy_model` not equal to `expected_tidy_model`.
  Length mismatch: comparison on first 5 components
  Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 1: Component 3: Mean relative difference: 0.2704512
  Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 2: Component 3: Mean relative difference: 0.6140457
  Component "groups": Component 2: Component 2: Component 2: Component 3: Component 1: Component 2: Component 1: Component 2: Component 1: Component 3: Mean relative difference: 0.5621248
  Component "groups": Component 2: Component 2: Component 2: Component 3: Component 1: Component 2: Component 1: Component 2: Component 2: Component 3: Mean relative difference: 0.8082655
  Component "groups": Component 2: Component 2: Component 3: Component 2: Component 1: Component 3: Mean relative difference: 0.07744851
  Component "groups": Component 2: Component 2: Component 3: Component 2: Component 2: Component 3: Mean relative difference: 0.1488984
  Component "groups": Component 3: Component 2: Component 1: Component 2: Component 1: Component 2: Component 2: Component 2: Mean relative difference: 0.1227027
  Component "groups": Component 3: Component 2: Component 1: Component 2: Component 1: Component 2: Component 3: Component 2: Mean relative difference: 3.735043
  ...
  Backtrace:
      â–†
   1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$lmerTest2) at test_lmerTest.R:25:3
   2.   └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)
  ── Failure ('test_lmerTest.R:37:3'): lmerTest ML works ─────────────────────────
  `tidy_model` not equal to `expected_tidy_model`.
  Length mismatch: comparison on first 4 components
  Component "groups": Component 1: Component 2: Component 1: Component 2: Mean absolute difference: Inf
  Component "groups": Component 1: Component 2: Component 2: Component 2: Mean absolute difference: Inf
  Component "groups": Component 1: Component 2: Component 3: Component 3: Mean absolute difference: Inf
  Component "groups": Component 1: Component 2: Component 4: Component 3: Mean absolute difference: Inf
  Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 1: Component 3: Mean relative difference: 0.01829808
  Component "groups": Component 2: Component 2: Component 1: Component 3: Component 1: Component 2: Component 1: Component 2: Component 2: Component 3: Mean relative difference: 0.03626137
  Component "groups": Component 2: Component 2: Component 1: Component 3: Component 2: Component 2: Component 1: Component 2: Component 1: Component 3: Mean absolute difference: 0.081321
  Component "groups": Component 2: Component 2: Component 2: Component 2: Component 1: Component 3: Mean relative difference: 0.05651295
  ...
  Backtrace:
      â–†
   1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$lmerTest_ML) at test_lmerTest.R:37:3
   2.   └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)
  ── Failure ('test_lmerTest.R:49:3'): lmerTest anova works ──────────────────────
  `tidy_model` not equal to `expected_tidy_model`.
  Component "groups": Component 1: Component 2: Component 1: Component 2: Component 1: Component 2: Mean relative difference: 14.41206
  Component "groups": Component 1: Component 2: Component 1: Component 2: Component 2: Component 2: Mean relative difference: 14.41206
  Component "groups": Component 1: Component 2: Component 1: Component 2: Component 3: Component 3: Mean relative difference: 12.96264
  Component "groups": Component 1: Component 2: Component 1: Component 2: Component 5: Component 4: Mean relative difference: 0.8530509
  Component "groups": Component 1: Component 2: Component 1: Component 2: Component 6: Component 2: Mean relative difference: 0.999955
  Backtrace:
      â–†
   1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$anova_lmerTest) at test_lmerTest.R:49:3
   2.   └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)
  ── Failure ('test_lmerTest.R:59:3'): lmerTest anova lme4 works ─────────────────
  `tidy_model` not equal to `expected_tidy_model`.
  Component "groups": Component 1: Component 2: Component 1: Component 2: Component 2: Component 2: Mean relative difference: 14.41206
  Component "groups": Component 1: Component 2: Component 1: Component 2: Component 3: Component 2: Mean relative difference: 14.41206
  Component "groups": Component 1: Component 2: Component 1: Component 2: Component 4: Component 3: Mean relative difference: 12.96264
  Backtrace:
      â–†
   1. └─tidystats:::expect_equal_models(model = model, expected_tidy_model = expected_statistics$anova_lmerTest_lme4) at test_lmerTest.R:59:3
   2.   └─testthat::expect_equal(tidy_model, expected_tidy_model, tolerance = tolerance)
  
  [ FAIL 13 | WARN 50 | SKIP 0 | PASS 171 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [24s/24s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE