* installing *source* package ‘tidygenomics’ ...
** this is package ‘tidygenomics’ version ‘0.1.2’
** package ‘tidygenomics’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
using C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/tidygenomics/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cluster_interval.cpp -o cluster_interval.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c tidygenomics_init.c -o tidygenomics_init.o
cluster_interval.cpp: In function ‘Rcpp::IntegerVector cluster_interval(Rcpp::NumericVector, Rcpp::NumericVector, int)’:
cluster_interval.cpp:104:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  104 |   for (int j = 0; j < indices.size(); j++) {
      |                   ~~^~~~~~~~~~~~~~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o tidygenomics.so RcppExports.o cluster_interval.o tidygenomics_init.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/tidygenomics/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/tidygenomics/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/tidygenomics/src'
installing to /data/gannet/ripley/R/packages/tests-devel/tidygenomics.Rcheck/00LOCK-tidygenomics/00new/tidygenomics/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tidygenomics)