* installing *source* package ‘supercells’ ...
** package ‘supercells’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (GCC) 14.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/supercells/src'
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c calc_stats.cpp -o calc_stats.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c cpp11.cpp -o cpp11.o
In file included from /data/gannet/ripley/R/test-dev/cpp11/include/cpp11.hpp:3,
                 from /data/gannet/ripley/R/test-dev/cpp11/include/cpp11/declarations.hpp:13,
                 from cpp11.cpp:5:
/data/gannet/ripley/R/test-dev/cpp11/include/cpp11/R.hpp:11:9: warning: "R_NO_REMAP" redefined
   11 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c create_connectivity.cpp -o create_connectivity.o
In file included from /data/gannet/ripley/R/test-dev/cpp11/include/cpp11/matrix.hpp:6,
                 from slic.h:2,
                 from create_connectivity.cpp:1:
/data/gannet/ripley/R/test-dev/cpp11/include/cpp11/R.hpp:11:9: warning: "R_NO_REMAP" redefined
   11 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c distances.cpp -o distances.o
In file included from /data/gannet/ripley/R/test-dev/cpp11/include/cpp11.hpp:3,
                 from distances.h:1,
                 from distances.cpp:1:
/data/gannet/ripley/R/test-dev/cpp11/include/cpp11/R.hpp:11:9: warning: "R_NO_REMAP" redefined
   11 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
In file included from distances.cpp:2:
dtw/include/DTW.hpp: In function 'double DTW::p_norm(std::vector<double>, std::vector<double>, double)':
dtw/include/DTW.hpp:50:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   50 |       for (int i = 0; i < a.size() ; i++) {
      |                       ~~^~~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c generate_superpixels.cpp -o generate_superpixels.o
In file included from /data/gannet/ripley/R/test-dev/cpp11/include/cpp11/matrix.hpp:6,
                 from slic.h:2,
                 from generate_superpixels.cpp:1:
/data/gannet/ripley/R/test-dev/cpp11/include/cpp11/R.hpp:11:9: warning: "R_NO_REMAP" redefined
   11 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c private_functions.cpp -o private_functions.o
In file included from /data/gannet/ripley/R/test-dev/cpp11/include/cpp11/matrix.hpp:6,
                 from slic.h:2,
                 from private_functions.cpp:1:
/data/gannet/ripley/R/test-dev/cpp11/include/cpp11/R.hpp:11:9: warning: "R_NO_REMAP" redefined
   11 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c run_slic.cpp -o run_slic.o
In file included from /data/gannet/ripley/R/test-dev/cpp11/include/cpp11/matrix.hpp:6,
                 from slic.h:2,
                 from run_slic.cpp:1:
/data/gannet/ripley/R/test-dev/cpp11/include/cpp11/R.hpp:11:9: warning: "R_NO_REMAP" redefined
   11 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c writers.cpp -o writers.o
In file included from /data/gannet/ripley/R/test-dev/cpp11/include/cpp11/matrix.hpp:6,
                 from slic.h:2,
                 from writers.cpp:1:
/data/gannet/ripley/R/test-dev/cpp11/include/cpp11/R.hpp:11:9: warning: "R_NO_REMAP" redefined
   11 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o supercells.so calc_stats.o cpp11.o create_connectivity.o distances.o generate_superpixels.o private_functions.o run_slic.o writers.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/supercells/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/supercells/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/supercells/src'
installing to /data/gannet/ripley/R/packages/tests-devel/supercells.Rcheck/00LOCK-supercells/00new/supercells/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (supercells)