• using R Under development (unstable) (2024-11-15 r87338)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (GCC) 14.2.0     GNU Fortran (GCC) 14.2.0
• running under: Fedora Linux 36 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘stringdist/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘stringdist’ version ‘0.9.12’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘stringdist’ can be installed ... [9s/13s] OK See the install log for details.
• used C compiler: ‘gcc-14 (GCC) 14.2.0’
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... ERROR Running examples in ‘stringdist-Ex.R’ failed The error most likely occurred in: > ### Name: seq_sim > ### Title: Compute similarity scores between sequences of integers > ### Aliases: seq_sim > > ### ** Examples > > L1 <- list(1:3,2:4) > L2 <- list(1:3) > seq_sim(L1,L2,method="osa") [1] 1.0000000 0.3333333 > > # note how missing values are handled (L2 is recycled over L1) > L1 <- list(c(1L,NA_integer_,3L),2:4,NA_integer_) > L2 <- list(1:3) > seq_sim(L1,L2) Error in do_dist(a = b, b = a, method = method, weight = weight, q = q, :   cannot get data pointer of 'integer' objects Calls: seq_sim -> <Anonymous> -> do_dist Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... ERROR   Running ‘tinytest.R’ Running the tests in ‘tests/tinytest.R’ failed. Complete output:   > if ( requireNamespace("tinytest", quietly=TRUE) ){   + tinytest::test_package("stringdist")   + }      test_afind.R.................. 0 tests   test_afind.R.................. 0 tests   test_afind.R.................. 0 tests   test_afind.R.................. 0 tests   test_afind.R.................. 0 tests   test_afind.R.................. 0 tests   test_afind.R.................. 0 tests   test_afind.R.................. 1 tests [0;32mOK [0m   test_afind.R.................. 2 tests [0;32mOK [0m   test_afind.R.................. 3 tests [0;32mOK [0m   test_afind.R.................. 3 tests [0;32mOK [0m   test_afind.R.................. 4 tests [0;32mOK [0m   test_afind.R.................. 4 tests [0;32mOK [0m   test_afind.R.................. 5 tests [0;32mOK [0m   test_afind.R.................. 6 tests [0;32mOK [0m   test_afind.R.................. 7 tests [0;32mOK [0m   test_afind.R.................. 8 tests [0;32mOK [0m   test_afind.R.................. 9 tests [0;32mOK [0m   test_afind.R.................. 9 tests [0;32mOK [0m   test_afind.R.................. 10 tests [0;32mOK [0m   test_afind.R.................. 10 tests [0;32mOK [0m   test_afind.R.................. 10 tests [0;32mOK [0m   test_afind.R.................. 10 tests [0;32mOK [0m   test_afind.R.................. 10 tests [0;32mOK [0m   test_afind.R.................. 19 tests [0;32mOK [0m   test_afind.R.................. 20 tests [0;32mOK [0m   test_afind.R.................. 21 tests [0;32mOK [0m   test_afind.R.................. 22 tests [0;32mOK [0m   test_afind.R.................. 23 tests [0;32mOK [0m   test_afind.R.................. 24 tests [0;32mOK [0m   test_afind.R.................. 25 tests [0;32mOK [0m   test_afind.R.................. 26 tests [0;32mOK [0m   test_afind.R.................. 27 tests [0;32mOK [0m   test_afind.R.................. 28 tests [0;32mOK [0m   test_afind.R.................. 29 tests [0;32mOK [0m   test_afind.R.................. 30 tests [0;32mOK [0m   test_afind.R.................. 31 tests [0;32mOK [0m   test_afind.R.................. 32 tests [0;32mOK [0m   test_afind.R.................. 33 tests [0;32mOK [0m [0;34m0.1s [0m      test_amatch.R................. 0 tests   test_amatch.R................. 1 tests [0;32mOK [0m   test_amatch.R................. 2 tests [0;32mOK [0m   test_amatch.R................. 3 tests [0;32mOK [0m   test_amatch.R................. 4 tests [0;32mOK [0m   test_amatch.R................. 5 tests [0;32mOK [0m   test_amatch.R................. 6 tests [0;32mOK [0m   test_amatch.R................. 7 tests [0;32mOK [0m   test_amatch.R................. 8 tests [0;32mOK [0m   test_amatch.R................. 9 tests [0;32mOK [0m   test_amatch.R................. 10 tests [0;32mOK [0m   test_amatch.R................. 11 tests [0;32mOK [0m   test_amatch.R................. 12 tests [0;32mOK [0m   test_amatch.R................. 13 tests [0;32mOK [0m   test_amatch.R................. 14 tests [0;32mOK [0m   test_amatch.R................. 15 tests [0;32mOK [0m   test_amatch.R................. 16 tests [0;32mOK [0m   test_amatch.R................. 17 tests [0;32mOK [0m   test_amatch.R................. 18 tests [0;32mOK [0m   test_amatch.R................. 19 tests [0;32mOK [0m   test_amatch.R................. 20 tests [0;32mOK [0m   test_amatch.R................. 21 tests [0;32mOK [0m   test_amatch.R................. 22 tests [0;32mOK [0m   test_amatch.R................. 23 tests [0;32mOK [0m   test_amatch.R................. 24 tests [0;32mOK [0m   test_amatch.R................. 25 tests [0;32mOK [0m   test_amatch.R................. 26 tests [0;32mOK [0m   test_amatch.R................. 27 tests [0;32mOK [0m   test_amatch.R................. 28 tests [0;32mOK [0m   test_amatch.R................. 29 tests [0;32mOK [0m   test_amatch.R................. 30 tests [0;32mOK [0m   test_amatch.R................. 31 tests [0;32mOK [0m   test_amatch.R................. 32 tests [0;32mOK [0m   test_amatch.R................. 33 tests [0;32mOK [0m   test_amatch.R................. 34 tests [0;32mOK [0m   test_amatch.R................. 35 tests [0;32mOK [0m   test_amatch.R................. 36 tests [0;32mOK [0m   test_amatch.R................. 37 tests [0;32mOK [0m   test_amatch.R................. 38 tests [0;32mOK [0m   test_amatch.R................. 39 tests [0;32mOK [0m   test_amatch.R................. 40 tests [0;32mOK [0m   test_amatch.R................. 41 tests [0;32mOK [0m   test_amatch.R................. 42 tests [0;32mOK [0m   test_amatch.R................. 43 tests [0;32mOK [0m   test_amatch.R................. 44 tests [0;32mOK [0m   test_amatch.R................. 45 tests [0;32mOK [0m   test_amatch.R................. 46 tests [0;32mOK [0m   test_amatch.R................. 47 tests [0;32mOK [0m   test_amatch.R................. 48 tests [0;32mOK [0m   test_amatch.R................. 49 tests [0;32mOK [0m   test_amatch.R................. 50 tests [0;32mOK [0m   test_amatch.R................. 51 tests [0;32mOK [0m   test_amatch.R................. 52 tests [0;32mOK [0m   test_amatch.R................. 53 tests [0;32mOK [0m   test_amatch.R................. 54 tests [0;32mOK [0m   test_amatch.R................. 55 tests [0;32mOK [0m   test_amatch.R................. 56 tests [0;32mOK [0m   test_amatch.R................. 57 tests [0;32mOK [0m   test_amatch.R................. 58 tests [0;32mOK [0m   test_amatch.R................. 59 tests [0;32mOK [0m   test_amatch.R................. 60 tests [0;32mOK [0m   test_amatch.R................. 61 tests [0;32mOK [0m   test_amatch.R................. 62 tests [0;32mOK [0m   test_amatch.R................. 63 tests [0;32mOK [0m   test_amatch.R................. 64 tests [0;32mOK [0m   test_amatch.R................. 65 tests [0;32mOK [0m   test_amatch.R................. 66 tests [0;32mOK [0m   test_amatch.R................. 67 tests [0;32mOK [0m   test_amatch.R................. 68 tests [0;32mOK [0m   test_amatch.R................. 69 tests [0;32mOK [0m   test_amatch.R................. 70 tests [0;32mOK [0m   test_amatch.R................. 71 tests [0;32mOK [0m   test_amatch.R................. 72 tests [0;32mOK [0m   test_amatch.R................. 73 tests [0;32mOK [0m   test_amatch.R................. 74 tests [0;32mOK [0m   test_amatch.R................. 75 tests [0;32mOK [0m   test_amatch.R................. 76 tests [0;32mOK [0m   test_amatch.R................. 77 tests [0;32mOK [0m   test_amatch.R................. 78 tests [0;32mOK [0m   test_amatch.R................. 79 tests [0;32mOK [0m   test_amatch.R................. 80 tests [0;32mOK [0m   test_amatch.R................. 81 tests [0;32mOK [0m   test_amatch.R................. 82 tests [0;32mOK [0m   test_amatch.R................. 83 tests [0;32mOK [0m   test_amatch.R................. 84 tests [0;32mOK [0m   test_amatch.R................. 85 tests [0;32mOK [0m   test_amatch.R................. 86 tests [0;32mOK [0m   test_amatch.R................. 87 tests [0;32mOK [0m   test_amatch.R................. 88 tests [0;32mOK [0m   test_amatch.R................. 89 tests [0;32mOK [0m   test_amatch.R................. 90 tests [0;32mOK [0m   test_amatch.R................. 91 tests [0;32mOK [0m   test_amatch.R................. 92 tests [0;32mOK [0m   test_amatch.R................. 93 tests [0;32mOK [0m   test_amatch.R................. 94 tests [0;32mOK [0m   test_amatch.R................. 95 tests [0;32mOK [0m   test_amatch.R................. 96 tests [0;32mOK [0m   test_amatch.R................. 97 tests [0;32mOK [0m   test_amatch.R................. 98 tests [0;32mOK [0m   test_amatch.R................. 98 tests [0;32mOK [0m   test_amatch.R................. 98 tests [0;32mOK [0m   test_amatch.R................. 98 tests [0;32mOK [0m   test_amatch.R................. 99 tests [0;32mOK [0m   test_amatch.R................. 100 tests [0;32mOK [0m   test_amatch.R................. 101 tests [0;32mOK [0m   test_amatch.R................. 102 tests [0;32mOK [0m   test_amatch.R................. 103 tests [0;32mOK [0m   test_amatch.R................. 104 tests [0;32mOK [0m   test_amatch.R................. 105 tests [0;32mOK [0m   test_amatch.R................. 106 tests [0;32mOK [0m   test_amatch.R................. 107 tests [0;32mOK [0m   test_amatch.R................. 108 tests [0;32mOK [0m   test_amatch.R................. 109 tests [0;32mOK [0m   test_amatch.R................. 110 tests [0;32mOK [0m   test_amatch.R................. 111 tests [0;32mOK [0m   test_amatch.R................. 112 tests [0;32mOK [0m   test_amatch.R................. 113 tests [0;32mOK [0m   test_amatch.R................. 114 tests [0;32mOK [0m   test_amatch.R................. 114 tests [0;32mOK [0m   test_amatch.R................. 114 tests [0;32mOK [0m   test_amatch.R................. 115 tests [0;32mOK [0m   test_amatch.R................. 116 tests [0;32mOK [0m   test_amatch.R................. 117 tests [0;32mOK [0m   test_amatch.R................. 118 tests [0;32mOK [0m [0;36m86ms [0m      test_gh_issue_59.R............ 0 tests [0;36m2ms [0m      test_gh_issue_78.R............ 0 tests   test_gh_issue_78.R............ 1 tests [0;32mOK [0m   test_gh_issue_78.R............ 2 tests [0;32mOK [0m [0;36m3ms [0m      test_gh_issue_88.R............ 0 tests   test_gh_issue_88.R............ 0 tests   test_gh_issue_88.R............ 1 tests [0;32mOK [0m [0;36m6ms [0m      test_phonetic.R............... 0 tests   test_phonetic.R............... 0 tests   test_phonetic.R............... 0 tests   test_phonetic.R............... 1 tests [0;32mOK [0m   test_phonetic.R............... 2 tests [0;32mOK [0m   test_phonetic.R............... 3 tests [0;32mOK [0m   test_phonetic.R............... 3 tests [0;32mOK [0m   test_phonetic.R............... 4 tests [0;32mOK [0m   test_phonetic.R............... 5 tests [0;32mOK [0m   test_phonetic.R............... 5 tests [0;32mOK [0m   test_phonetic.R............... 6 tests [0;32mOK [0m [0;36m8ms [0m      test_qgrams.R................. 0 tests   test_qgrams.R................. 1 tests [0;32mOK [0m   test_qgrams.R................. 2 tests [0;32mOK [0m   test_qgrams.R................. 3 tests [0;32mOK [0m   test_qgrams.R................. 4 tests [0;32mOK [0m   test_qgrams.R................. 5 tests [0;32mOK [0m   test_qgrams.R................. 6 tests [0;32mOK [0m   test_qgrams.R................. 7 tests [0;32mOK [0m    *** caught segfault ***   address 0x1, cause 'memory not mapped'      Traceback:    1: qgrams(c(""), q = 0)    2: data.class(current)    3: all.equal.numeric(target, current, tolerance = tolerance, ...)    4: all.equal(target, current, tolerance = tolerance, ...)    5: expect_equal(current, target, check.attributes = FALSE, use.names = FALSE, tolerance = tolerance, info = info, ...)    6: fun(...)    7: expect_equivalent(qgrams(c(""), q = 0), as.matrix(table("")))    8: eval(expr, envir = e)    9: eval(expr, envir = e)   10: FUN(X[[i]], ...)   11: lapply(basename(testfiles), run_test_file, at_home = at_home, verbose = verbose, color = color, remove_side_effects = remove_side_effects, ...)   12: run_test_dir(testdir, at_home = at_home, cluster = cluster, ...)   13: tinytest::test_package("stringdist")   An irrecoverable exception occurred. R is aborting now ...
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [21s/31s] OK
• checking PDF version of manual ... [8s/13s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 2 ERRORs