* installing *source* package ‘sspse’ ...
** package ‘sspse’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (GCC) 14.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/sspse/src'
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cmp.c -o cmp.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c dis.c -o dis.o
dis.c: In function 'gsppsdis':
dis.c:30:68: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
30 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^~~~~~~~~~~~~~
dis.c:30:55: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
30 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^~~~~~~~~~~
dis.c:30:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable]
30 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^~~~
dis.c:30:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable]
30 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c dpoilog.c -o dpoilog.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c getinclC.c -o getinclC.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c getinclCstacked.c -o getinclCstacked.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c likelihoodcmp.c -o likelihoodcmp.o
likelihoodcmp.c: In function 'lcmp':
likelihoodcmp.c:33:49: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
33 | double dkappa, ddf, dmu, dsigma, dmuproposal, dsigmaproposal;
| ^~~~~~~~~~~~~~
likelihoodcmp.c:33:36: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
33 | double dkappa, ddf, dmu, dsigma, dmuproposal, dsigmaproposal;
| ^~~~~~~~~~~
likelihoodcmp.c:33:18: warning: variable 'ddf' set but not used [-Wunused-but-set-variable]
33 | double dkappa, ddf, dmu, dsigma, dmuproposal, dsigmaproposal;
| ^~~
likelihoodcmp.c:33:10: warning: variable 'dkappa' set but not used [-Wunused-but-set-variable]
33 | double dkappa, ddf, dmu, dsigma, dmuproposal, dsigmaproposal;
| ^~~~~~
likelihoodcmp.c: In function 'MHlcmp':
likelihoodcmp.c:278:18: warning: variable 'dsigma2' set but not used [-Wunused-but-set-variable]
278 | double dsigma, dsigma2, dmuproposal, dsigmaproposal;
| ^~~~~~~
likelihoodcmp.c:277:31: warning: variable 'dmu' set but not used [-Wunused-but-set-variable]
277 | double dkappa, rkappa, ddf, dmu;
| ^~~
likelihoodcmp.c:277:26: warning: variable 'ddf' set but not used [-Wunused-but-set-variable]
277 | double dkappa, rkappa, ddf, dmu;
| ^~~
likelihoodcmp.c:277:18: warning: variable 'rkappa' set but not used [-Wunused-but-set-variable]
277 | double dkappa, rkappa, ddf, dmu;
| ^~~~~~
likelihoodcmp.c:271:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable]
271 | int i, Ki, Ni, isamp, iinterval, isamplesize, iburnin;
| ^~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mcmc.c -o mcmc.o
mcmc.c: In function 'gspps':
mcmc.c:30:53: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
30 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^~~~~~~~~~~~~~
mcmc.c:30:40: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
30 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^~~~~~~~~~~
mcmc.c:30:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable]
30 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^~~~
mcmc.c:30:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable]
30 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^~~~~~~
mcmc.c: In function 'gsppsN':
mcmc.c:234:53: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
234 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^~~~~~~~~~~~~~
mcmc.c:234:40: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
234 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^~~~~~~~~~~
mcmc.c:234:31: warning: variable 'dsigma0' set but not used [-Wunused-but-set-variable]
234 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^~~~~~~
mcmc.c:234:25: warning: variable 'dmu0' set but not used [-Wunused-but-set-variable]
234 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^~~~
mcmc.c:234:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable]
234 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^~~~
mcmc.c:234:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable]
234 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^~~~~~~
mcmc.c: In function 'MHplnorig':
mcmc.c:348:40: warning: variable 'logK' set but not used [-Wunused-but-set-variable]
348 | double dkappa0, rkappa0, ddf0, dmu0, logK;
| ^~~~
mcmc.c:342:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable]
342 | int i, Ki, Ni, isamp, iinterval, isamplesize, iburnin;
| ^~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c posteriorcmp.c -o posteriorcmp.o
posteriorcmp.c: In function 'MHcmptheta':
posteriorcmp.c:280:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable]
280 | int i, Ki, Ni, isamp, iinterval, isamplesize, iburnintheta;
| ^~
posteriorcmp.c:399:15: warning: 'lnlamstar' may be used uninitialized [-Wmaybe-uninitialized]
399 | pstar[Np]=cmp(Np+1,lnlamstar,nustar,lzcmp,give_log0);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posteriorcmp.c:282:23: note: 'lnlamstar' was declared here
282 | double mui, mustar, lnlamstar, lnlami, lp;
| ^~~~~~~~~
posteriorcmp.c: In function 'gcmp':
posteriorcmp.c:123:13: warning: 'lnlami' may be used uninitialized [-Wmaybe-uninitialized]
123 | lzcmp = zcmp(exp(lnlami), nui, errval, Ki, give_log1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posteriorcmp.c:31:23: note: 'lnlami' was declared here
31 | double mui, sigmai, lnlami, nui, dsamp;
| ^~~~~~
posteriorcmp.c:123:13: warning: 'nui' may be used uninitialized [-Wmaybe-uninitialized]
123 | lzcmp = zcmp(exp(lnlami), nui, errval, Ki, give_log1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posteriorcmp.c:31:31: note: 'nui' was declared here
31 | double mui, sigmai, lnlami, nui, dsamp;
| ^~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c posteriorcmp2.c -o posteriorcmp2.o
posteriorcmp2.c: In function 'gcmp2':
posteriorcmp2.c:38:27: warning: variable 'dnuproposal' set but not used [-Wunused-but-set-variable]
38 | double ddfmu, ddfsigma, dnuproposal;
| ^~~~~~~~~~~
posteriorcmp2.c:38:17: warning: variable 'ddfsigma' set but not used [-Wunused-but-set-variable]
38 | double ddfmu, ddfsigma, dnuproposal;
| ^~~~~~~~
posteriorcmp2.c:38:10: warning: variable 'ddfmu' set but not used [-Wunused-but-set-variable]
38 | double ddfmu, ddfsigma, dnuproposal;
| ^~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c posteriorcmpdisease.c -o posteriorcmpdisease.o
posteriorcmpdisease.c: In function 'gcmpdisease':
posteriorcmpdisease.c:33:68: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
33 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^~~~~~~~~~~~~~
posteriorcmpdisease.c:33:55: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
33 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^~~~~~~~~~~
posteriorcmpdisease.c:33:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable]
33 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^~~~
posteriorcmpdisease.c:33:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable]
33 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c posteriorcmpvis.c -o posteriorcmpvis.o
posteriorcmpvis.c: In function 'MHcmpmem':
posteriorcmpvis.c:526:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable]
526 | double dmemnu, dmemnur;
| ^~~~~~~
posteriorcmpvis.c: In function 'gcmpvis':
posteriorcmpvis.c:167:13: warning: 'lnlami' may be used uninitialized [-Wmaybe-uninitialized]
167 | lzcmp = zcmp(exp(lnlami), nui, errval, Ki, give_log1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posteriorcmpvis.c:47:23: note: 'lnlami' was declared here
47 | double mui, sigmai, lnlami, nui, dsamp;
| ^~~~~~
posteriorcmpvis.c:167:13: warning: 'nui' may be used uninitialized [-Wmaybe-uninitialized]
167 | lzcmp = zcmp(exp(lnlami), nui, errval, Ki, give_log1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posteriorcmpvis.c:47:31: note: 'nui' was declared here
47 | double mui, sigmai, lnlami, nui, dsamp;
| ^~~
posteriorcmpvis.c:51:18: warning: 'betati' may be used uninitialized [-Wmaybe-uninitialized]
51 | double beta0i, betati, betaui, lmemmui, memnui;
| ^~~~~~
posteriorcmpvis.c:51:26: warning: 'betaui' may be used uninitialized [-Wmaybe-uninitialized]
51 | double beta0i, betati, betaui, lmemmui, memnui;
| ^~~~~~
posteriorcmpvis.c:51:34: warning: 'lmemmui' may be used uninitialized [-Wmaybe-uninitialized]
51 | double beta0i, betati, betaui, lmemmui, memnui;
| ^~~~~~~
posteriorcmpvis.c:51:43: warning: 'memnui' may be used uninitialized [-Wmaybe-uninitialized]
51 | double beta0i, betati, betaui, lmemmui, memnui;
| ^~~~~~
posteriorcmpvis.c:51:10: warning: 'beta0i' may be used uninitialized [-Wmaybe-uninitialized]
51 | double beta0i, betati, betaui, lmemmui, memnui;
| ^~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c posteriorcmpvis2.c -o posteriorcmpvis2.o
posteriorcmpvis2.c: In function 'gcmpvis2':
posteriorcmpvis2.c:62:10: warning: unused variable 'rtprob' [-Wunused-variable]
62 | double rtprob, lliki;
| ^~~~~~
posteriorcmpvis2.c: In function 'MHcmpbetau':
posteriorcmpvis2.c:636:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable]
636 | double dmemnu, dmemnur;
| ^~~~~~~
posteriorcmpvis2.c:625:16: warning: unused variable 'rtprob' [-Wunused-variable]
625 | double temp, rtprob;
| ^~~~~~
posteriorcmpvis2.c: In function 'gcmpvis2':
posteriorcmpvis2.c:58:18: warning: 'betati' may be used uninitialized [-Wmaybe-uninitialized]
58 | double beta0i, betati, betaui, lmemmui, memnui;
| ^~~~~~
posteriorcmpvis2.c:58:26: warning: 'betaui' may be used uninitialized [-Wmaybe-uninitialized]
58 | double beta0i, betati, betaui, lmemmui, memnui;
| ^~~~~~
posteriorcmpvis2.c:58:34: warning: 'lmemmui' may be used uninitialized [-Wmaybe-uninitialized]
58 | double beta0i, betati, betaui, lmemmui, memnui;
| ^~~~~~~
posteriorcmpvis2.c:58:43: warning: 'memnui' may be used uninitialized [-Wmaybe-uninitialized]
58 | double beta0i, betati, betaui, lmemmui, memnui;
| ^~~~~~
posteriorcmpvis2.c:209:13: warning: 'nui' may be used uninitialized [-Wmaybe-uninitialized]
209 | lzcmp = zcmp(exp(lnlami), nui, errval, Ki, give_log1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posteriorcmpvis2.c:55:30: note: 'nui' was declared here
55 | double mui, sigmai, dsamp, nui, lnlami, sigma2i;
| ^~~
posteriorcmpvis2.c:209:13: warning: 'lnlami' may be used uninitialized [-Wmaybe-uninitialized]
209 | lzcmp = zcmp(exp(lnlami), nui, errval, Ki, give_log1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posteriorcmpvis2.c:55:35: note: 'lnlami' was declared here
55 | double mui, sigmai, dsamp, nui, lnlami, sigma2i;
| ^~~~~~
posteriorcmpvis2.c:280:23: warning: 'beta0i' may be used uninitialized [-Wmaybe-uninitialized]
280 | temp = beta0i + betati*log(rectime[j]) + betaui*log(i+1.0);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
posteriorcmpvis2.c:58:10: note: 'beta0i' was declared here
58 | double beta0i, betati, betaui, lmemmui, memnui;
| ^~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c posteriorcmpwpvis.c -o posteriorcmpwpvis.o
posteriorcmpwpvis.c: In function 'gcmpwpvis':
posteriorcmpwpvis.c:58:10: warning: unused variable 'rtprob' [-Wunused-variable]
58 | double rtprob, lliki;
| ^~~~~~
posteriorcmpwpvis.c: In function 'MHwpmem':
posteriorcmpwpvis.c:495:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable]
495 | double dmemnu, dmemnur;
| ^~~~~~~
posteriorcmpwpvis.c:482:16: warning: unused variable 'rtprob' [-Wunused-variable]
482 | double temp, rtprob;
| ^~~~~~
posteriorcmpwpvis.c: In function 'gcmpwpvis':
posteriorcmpwpvis.c:172:13: warning: 'lnlami' may be used uninitialized [-Wmaybe-uninitialized]
172 | lzcmp = zcmp(exp(lnlami), nui, errval, Ki, give_log1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posteriorcmpwpvis.c:49:23: note: 'lnlami' was declared here
49 | double mui, sigmai, lnlami, nui, dsamp;
| ^~~~~~
posteriorcmpwpvis.c:172:13: warning: 'nui' may be used uninitialized [-Wmaybe-uninitialized]
172 | lzcmp = zcmp(exp(lnlami), nui, errval, Ki, give_log1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posteriorcmpwpvis.c:49:31: note: 'nui' was declared here
49 | double mui, sigmai, lnlami, nui, dsamp;
| ^~~
posteriorcmpwpvis.c:53:18: warning: 'betati' may be used uninitialized [-Wmaybe-uninitialized]
53 | double beta0i, betati, betaui, lmemmui, memnui;
| ^~~~~~
posteriorcmpwpvis.c:53:26: warning: 'betaui' may be used uninitialized [-Wmaybe-uninitialized]
53 | double beta0i, betati, betaui, lmemmui, memnui;
| ^~~~~~
posteriorcmpwpvis.c:53:34: warning: 'lmemmui' may be used uninitialized [-Wmaybe-uninitialized]
53 | double beta0i, betati, betaui, lmemmui, memnui;
| ^~~~~~~
posteriorcmpwpvis.c:53:43: warning: 'memnui' may be used uninitialized [-Wmaybe-uninitialized]
53 | double beta0i, betati, betaui, lmemmui, memnui;
| ^~~~~~
posteriorcmpwpvis.c:53:10: warning: 'beta0i' may be used uninitialized [-Wmaybe-uninitialized]
53 | double beta0i, betati, betaui, lmemmui, memnui;
| ^~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c posteriorcmpwpvis2.c -o posteriorcmpwpvis2.o
posteriorcmpwpvis2.c: In function 'MHwpmem2':
posteriorcmpwpvis2.c:650:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable]
650 | double dmemnu, dmemnur;
| ^~~~~~~
posteriorcmpwpvis2.c: In function 'gcmpwpvis2':
posteriorcmpwpvis2.c:61:18: warning: 'betati' may be used uninitialized [-Wmaybe-uninitialized]
61 | double beta0i, betati, betaui, lmemmui, memnui;
| ^~~~~~
posteriorcmpwpvis2.c:61:26: warning: 'betaui' may be used uninitialized [-Wmaybe-uninitialized]
61 | double beta0i, betati, betaui, lmemmui, memnui;
| ^~~~~~
posteriorcmpwpvis2.c:61:34: warning: 'lmemmui' may be used uninitialized [-Wmaybe-uninitialized]
61 | double beta0i, betati, betaui, lmemmui, memnui;
| ^~~~~~~
posteriorcmpwpvis2.c:61:43: warning: 'memnui' may be used uninitialized [-Wmaybe-uninitialized]
61 | double beta0i, betati, betaui, lmemmui, memnui;
| ^~~~~~
posteriorcmpwpvis2.c:214:13: warning: 'nui' may be used uninitialized [-Wmaybe-uninitialized]
214 | lzcmp = zcmp(exp(lnlami), nui, errval, Ki, give_log1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posteriorcmpwpvis2.c:58:30: note: 'nui' was declared here
58 | double mui, sigmai, dsamp, nui, lnlami, sigma2i;
| ^~~
posteriorcmpwpvis2.c:214:13: warning: 'lnlami' may be used uninitialized [-Wmaybe-uninitialized]
214 | lzcmp = zcmp(exp(lnlami), nui, errval, Ki, give_log1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posteriorcmpwpvis2.c:58:35: note: 'lnlami' was declared here
58 | double mui, sigmai, dsamp, nui, lnlami, sigma2i;
| ^~~~~~
posteriorcmpwpvis2.c:273:23: warning: 'beta0i' may be used uninitialized [-Wmaybe-uninitialized]
273 | temp = beta0i + betati*log(rectime[j]) + betaui*log(i+1.0);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
posteriorcmpwpvis2.c:61:10: note: 'beta0i' was declared here
61 | double beta0i, betati, betaui, lmemmui, memnui;
| ^~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c posteriorcmpwpvis_binomial.c -o posteriorcmpwpvis_binomial.o
posteriorcmpwpvis_binomial.c: In function 'MHwpmem_binomial':
posteriorcmpwpvis_binomial.c:486:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable]
486 | double dmemnu, dmemnur;
| ^~~~~~~
posteriorcmpwpvis_binomial.c: In function 'gcmpwpvis_binomial':
posteriorcmpwpvis_binomial.c:168:13: warning: 'lnlami' may be used uninitialized [-Wmaybe-uninitialized]
168 | lzcmp = zcmp(exp(lnlami), nui, errval, Ki, give_log1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posteriorcmpwpvis_binomial.c:48:23: note: 'lnlami' was declared here
48 | double mui, sigmai, lnlami, nui, dsamp;
| ^~~~~~
posteriorcmpwpvis_binomial.c:168:13: warning: 'nui' may be used uninitialized [-Wmaybe-uninitialized]
168 | lzcmp = zcmp(exp(lnlami), nui, errval, Ki, give_log1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posteriorcmpwpvis_binomial.c:48:31: note: 'nui' was declared here
48 | double mui, sigmai, lnlami, nui, dsamp;
| ^~~
posteriorcmpwpvis_binomial.c:52:18: warning: 'betati' may be used uninitialized [-Wmaybe-uninitialized]
52 | double beta0i, betati, lmemmui, memnui;
| ^~~~~~
posteriorcmpwpvis_binomial.c:52:26: warning: 'lmemmui' may be used uninitialized [-Wmaybe-uninitialized]
52 | double beta0i, betati, lmemmui, memnui;
| ^~~~~~~
posteriorcmpwpvis_binomial.c:52:10: warning: 'beta0i' may be used uninitialized [-Wmaybe-uninitialized]
52 | double beta0i, betati, lmemmui, memnui;
| ^~~~~~
posteriorcmpwpvis_binomial.c:395:32: warning: 'memnui' may be used uninitialized [-Wmaybe-uninitialized]
395 | sample[isamp*dimsample+8]=memnui;
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
posteriorcmpwpvis_binomial.c:52:35: note: 'memnui' was declared here
52 | double beta0i, betati, lmemmui, memnui;
| ^~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c posteriornbinom.c -o posteriornbinom.o
posteriornbinom.c: In function 'gnbinom':
posteriornbinom.c:31:53: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^~~~~~~~~~~~~~
posteriornbinom.c:31:40: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^~~~~~~~~~~
posteriornbinom.c:31:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable]
31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^~~~
posteriornbinom.c:31:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable]
31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^~~~~~~
posteriornbinom.c: In function 'MHnbinom':
posteriornbinom.c:245:40: warning: variable 'logK' set but not used [-Wunused-but-set-variable]
245 | double dkappa0, rkappa0, ddf0, dmu0, logK;
| ^~~~
posteriornbinom.c:239:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable]
239 | int i, Ki, Ni, isamp, iinterval, isamplesize, iburnin;
| ^~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c posteriorpln.c -o posteriorpln.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c posteriorplndisease.c -o posteriorplndisease.o
posteriorpln.c: In function 'gpln':
posteriorpln.c:31:53: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^~~~~~~~~~~~~~
posteriorpln.c:31:40: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^~~~~~~~~~~
posteriorpln.c:31:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable]
31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^~~~
posteriorpln.c:31:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable]
31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^~~~~~~
posteriorpln.c: In function 'MHpln':
posteriorpln.c:248:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable]
248 | int i, Ki, Ni, isamp, iinterval, isamplesize, iburnin;
| ^~
posteriorplndisease.c: In function 'gplndisease':
posteriorplndisease.c:32:68: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
32 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^~~~~~~~~~~~~~
posteriorplndisease.c:32:55: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
32 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^~~~~~~~~~~
posteriorplndisease.c:32:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable]
32 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^~~~
posteriorplndisease.c:32:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable]
32 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c ppspolya.c -o ppspolya.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c size.c -o size.o
size.c: In function 'bnw_NC':
size.c:102:32: warning: variable 'lM' set but not used [-Wunused-but-set-variable]
102 | double Nd, lcardN, Kd, Md, lM;
| ^~
size.c:102:12: warning: variable 'Nd' set but not used [-Wunused-but-set-variable]
102 | double Nd, lcardN, Kd, Md, lM;
| ^~
size.c: In function 'bnw_NCbound':
size.c:228:24: warning: variable 'lM' set but not used [-Wunused-but-set-variable]
228 | double Nd, Kd, Md, lM;
| ^~
size.c:228:16: warning: variable 'Kd' set but not used [-Wunused-but-set-variable]
228 | double Nd, Kd, Md, lM;
| ^~
size.c:228:12: warning: variable 'Nd' set but not used [-Wunused-but-set-variable]
228 | double Nd, Kd, Md, lM;
| ^~
size.c:226:12: warning: variable 'mhtn' set but not used [-Wunused-but-set-variable]
226 | double mhtn;
| ^~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c size.older.c -o size.older.o
size.older.c: In function 'bnw_mp':
size.older.c:155:16: warning: variable 'lM' set but not used [-Wunused-but-set-variable]
155 | double Md, lM;
| ^~
size.older.c: In function 'bnw_mpwar':
size.older.c:222:20: warning: variable 'lM' set but not used [-Wunused-but-set-variable]
222 | double Nc, Md, lM;
| ^~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sizeall.c -o sizeall.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sspse_init.c -o sspse_init.o
gcc-14 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o sspse.so cmp.o dis.o dpoilog.o getinclC.o getinclCstacked.o likelihoodcmp.o mcmc.o posteriorcmp.o posteriorcmp2.o posteriorcmpdisease.o posteriorcmpvis.o posteriorcmpvis2.o posteriorcmpwpvis.o posteriorcmpwpvis2.o posteriorcmpwpvis_binomial.o posteriornbinom.o posteriorpln.o posteriorplndisease.o ppspolya.o size.o size.older.o sizeall.o sspse_init.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/sspse/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/sspse/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/sspse/src'
installing to /data/gannet/ripley/R/packages/tests-devel/sspse.Rcheck/00LOCK-sspse/00new/sspse/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sspse)