* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/spatPomp.Rcheck’
* using R Under development (unstable) (2025-02-15 r87723)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘spatPomp/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘spatPomp’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘spatPomp’ can be installed ... [30s/38s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/spatPomp-00install.html' for details.
* used C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [34s/43s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [102s/143s] OK
  Running ‘abf.R’
  Running ‘abfir.R’
  Running ‘arma_benchmark.R’
  Running ‘bm.R’ [27s/36s]
  Comparing ‘bm.Rout’ to ‘bm.Rout.save’ ... OK
  Running ‘bm2.R’ [10s/15s]
  Comparing ‘bm2.Rout’ to ‘bm2.Rout.save’ ... OK
  Running ‘bpfilter.R’
  Running ‘concat.R’
  Running ‘enkf.R’
  Running ‘gbm.R’
  Comparing ‘gbm.Rout’ to ‘gbm.Rout.save’ ... OK
  Running ‘girf.R’
  Running ‘he10.R’ [10s/15s]
  Comparing ‘he10.Rout’ to ‘he10.Rout.save’ ... OK
  Running ‘ibpf.R’
  Running ‘ienkf.R’
  Running ‘igirf.R’
  Running ‘iter_filter.R’
  Comparing ‘iter_filter.Rout’ to ‘iter_filter.Rout.save’ ... OK
  Running ‘iubf.R’
  Running ‘lorenz.R’
  Comparing ‘lorenz.Rout’ to ‘lorenz.Rout.save’ ... OK
  Running ‘measles.R’ [20s/26s]
  Comparing ‘measles.Rout’ to ‘measles.Rout.save’ ... OK
  Running ‘measles2.R’ [12s/18s]
  Comparing ‘measles2.Rout’ to ‘measles2.Rout.save’ ... OK
  Running ‘param_formats.R’
  Comparing ‘param_formats.Rout’ to ‘param_formats.Rout.save’ ... OK
  Running ‘pfilter.R’
  Running ‘plot.R’
  Running ‘simulate.R’
  Running ‘spatPomp.R’
  Running ‘undefined.R’
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [24s/33s] OK
* checking PDF version of manual ... [10s/14s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: OK