* installing *source* package ‘spOccupancy’ ...
** package ‘spOccupancy’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (GCC) 14.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/spOccupancy/src'
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c PGOcc.cpp -o PGOcc.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c idist.cpp -o idist.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c init.cpp -o init.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c intMsPGOcc.cpp -o intMsPGOcc.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c intPGOcc.cpp -o intPGOcc.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c lfJSDM.cpp -o lfJSDM.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c lfMsPGOcc.cpp -o lfMsPGOcc.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c mkSpCov.cpp -o mkSpCov.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c msPGOcc.cpp -o msPGOcc.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c nn.cpp -o nn.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c postHocLM.cpp -o postHocLM.o
idist.cpp:1:9: warning: "R_NO_REMAP" redefined
1 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c rpg.cpp -o rpg.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c sfJSDMNNGP.cpp -o sfJSDMNNGP.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c sfMsPGOccNNGP.cpp -o sfMsPGOccNNGP.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c sfMsPGOccNNGPPredict.cpp -o sfMsPGOccNNGPPredict.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c spIntPGOcc.cpp -o spIntPGOcc.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c spIntPGOccNNGP.cpp -o spIntPGOccNNGP.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c spMsPGOcc.cpp -o spMsPGOcc.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c spMsPGOccNNGP.cpp -o spMsPGOccNNGP.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c spMsPGOccNNGPPredict.cpp -o spMsPGOccNNGPPredict.o
init.cpp:2:9: warning: "R_NO_REMAP" redefined
2 | #define R_NO_REMAP
| ^~~~~~~~~~
mkSpCov.cpp:2:9: warning: "R_NO_REMAP" redefined
2 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c spMsPGOccPredict.cpp -o spMsPGOccPredict.o
rpg.cpp:1:9: warning: "R_NO_REMAP" redefined
1 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c spPGOcc.cpp -o spPGOcc.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c spPGOccNNGP.cpp -o spPGOccNNGP.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c spPGOccNNGPPredict.cpp -o spPGOccNNGPPredict.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c spPGOccPredict.cpp -o spPGOccPredict.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c stIntPGOccNNGP.cpp -o stIntPGOccNNGP.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c stMsPGOccNNGP.cpp -o stMsPGOccNNGP.o
PGOcc.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
msPGOcc.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
intMsPGOcc.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
lfJSDM.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
intPGOcc.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
spPGOccPredict.cpp:9:9: warning: "R_NO_REMAP" redefined
9 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
sfJSDMNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
stMsPGOccNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
spMsPGOcc.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
spPGOcc.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
sfMsPGOccNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
postHocLM.cpp:5:9: warning: "R_NO_REMAP" redefined
5 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
lfMsPGOcc.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
spMsPGOccNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
sfMsPGOccNNGPPredict.cpp:9:9: warning: "R_NO_REMAP" redefined
9 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
spPGOccNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
spIntPGOcc.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
spIntPGOccNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
spPGOccNNGPPredict.cpp:9:9: warning: "R_NO_REMAP" redefined
9 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
stIntPGOccNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
spMsPGOccPredict.cpp:9:9: warning: "R_NO_REMAP" redefined
9 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
spMsPGOccNNGPPredict.cpp:9:9: warning: "R_NO_REMAP" redefined
9 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
nn.cpp:13:9: warning: "R_NO_REMAP" redefined
13 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c stPGOccNNGP.cpp -o stPGOccNNGP.o
postHocLM.cpp: In function 'SEXPREC* postHocLM(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
postHocLM.cpp:292:26: warning: 'sigmaSqSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
292 | &REAL(sigmaSqSamples_r)[s*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~
postHocLM.cpp:114:10: note: 'sigmaSqSamples_r' was declared here
114 | SEXP sigmaSqSamples_r;
| ^~~~~~~~~~~~~~~~
postHocLM.cpp:294:26: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
294 | &REAL(betaStarSamples_r)[s*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
postHocLM.cpp:115:10: note: 'betaStarSamples_r' was declared here
115 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c stPGOccNNGPPredict.cpp -o stPGOccNNGPPredict.o
stPGOccNNGPPredict.cpp:9:9: warning: "R_NO_REMAP" redefined
9 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
stPGOccNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
PGOcc.cpp: In function 'SEXPREC* PGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
PGOcc.cpp:573:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
573 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
PGOcc.cpp:183:10: note: 'sigmaSqPSamples_r' was declared here
183 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
PGOcc.cpp:575:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
575 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
PGOcc.cpp:184:10: note: 'alphaStarSamples_r' was declared here
184 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
PGOcc.cpp:567:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
567 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
PGOcc.cpp:192:10: note: 'sigmaSqPsiSamples_r' was declared here
192 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
PGOcc.cpp:569:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
569 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
PGOcc.cpp:193:10: note: 'betaStarSamples_r' was declared here
193 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
PGOcc.cpp:650:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
650 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples"));
| ~~~~~~^~~
PGOcc.cpp:212:12: note: 'tmp_0' was declared here
212 | double tmp_0, tmp_02;
| ^~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c svcMsPGOccNNGP.cpp -o svcMsPGOccNNGP.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c svcMsPGOccNNGPPredict.cpp -o svcMsPGOccNNGPPredict.o
svcMsPGOccNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c svcPGBinomNNGP.cpp -o svcPGBinomNNGP.o
svcMsPGOccNNGPPredict.cpp:9:9: warning: "R_NO_REMAP" redefined
9 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
svcPGBinomNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c svcPGOccNNGP.cpp -o svcPGOccNNGP.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c svcPGOccNNGPPredict.cpp -o svcPGOccNNGPPredict.o
spIntPGOccNNGP.cpp: In function 'SEXPREC* spIntPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spIntPGOccNNGP.cpp:938:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
938 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spIntPGOccNNGP.cpp:291:10: note: 'sigmaSqPSamples_r' was declared here
291 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spIntPGOccNNGP.cpp:940:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
940 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spIntPGOccNNGP.cpp:292:10: note: 'alphaStarSamples_r' was declared here
292 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spIntPGOccNNGP.cpp:932:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
932 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
spIntPGOccNNGP.cpp:300:10: note: 'sigmaSqPsiSamples_r' was declared here
300 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
spIntPGOccNNGP.cpp:934:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
934 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spIntPGOccNNGP.cpp:301:10: note: 'betaStarSamples_r' was declared here
301 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spIntPGOccNNGP.cpp:447:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized]
447 | double logDet;
| ^~~~~~
spIntPGOccNNGP.cpp:455:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized]
455 | double a, v, b, e, mu, var, aij;
| ^
intPGOcc.cpp: In function 'SEXPREC* intPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
intPGOcc.cpp:645:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
645 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
intPGOcc.cpp:212:10: note: 'sigmaSqPSamples_r' was declared here
212 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
intPGOcc.cpp:647:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
647 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
intPGOcc.cpp:213:10: note: 'alphaStarSamples_r' was declared here
213 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
intPGOcc.cpp:639:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
639 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
intPGOcc.cpp:221:10: note: 'sigmaSqPsiSamples_r' was declared here
221 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
intPGOcc.cpp:641:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
641 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
intPGOcc.cpp:222:10: note: 'betaStarSamples_r' was declared here
222 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c svcTIntPGOccNNGP.cpp -o svcTIntPGOccNNGP.o
svcPGOccNNGPPredict.cpp:9:9: warning: "R_NO_REMAP" redefined
9 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
svcPGOccNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
msPGOcc.cpp: In function 'SEXPREC* msPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
msPGOcc.cpp:718:59: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
718 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msPGOcc.cpp:241:10: note: 'sigmaSqPSamples_r' was declared here
241 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
msPGOcc.cpp:719:61: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
719 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msPGOcc.cpp:242:10: note: 'alphaStarSamples_r' was declared here
242 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
msPGOcc.cpp:722:61: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
722 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
msPGOcc.cpp:250:10: note: 'sigmaSqPsiSamples_r' was declared here
250 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
msPGOcc.cpp:723:60: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
723 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msPGOcc.cpp:251:10: note: 'betaStarSamples_r' was declared here
251 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
msPGOcc.cpp:804:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
804 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples"));
| ~~~~~~^~~
msPGOcc.cpp:156:12: note: 'tmp_0' was declared here
156 | double tmp_0, tmp_02;
| ^~~~~
svcTIntPGOccNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c svcTMsPGOccNNGP.cpp -o svcTMsPGOccNNGP.o
spIntPGOcc.cpp: In function 'SEXPREC* spIntPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spIntPGOcc.cpp:892:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
892 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spIntPGOcc.cpp:242:10: note: 'sigmaSqPSamples_r' was declared here
242 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spIntPGOcc.cpp:894:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
894 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spIntPGOcc.cpp:243:10: note: 'alphaStarSamples_r' was declared here
243 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spIntPGOcc.cpp:886:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
886 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
spIntPGOcc.cpp:251:10: note: 'sigmaSqPsiSamples_r' was declared here
251 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
spIntPGOcc.cpp:888:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
888 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spIntPGOcc.cpp:252:10: note: 'betaStarSamples_r' was declared here
252 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
intMsPGOcc.cpp: In function 'SEXPREC* intMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
intMsPGOcc.cpp:697:61: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
697 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
intMsPGOcc.cpp:238:10: note: 'sigmaSqPsiSamples_r' was declared here
238 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
intMsPGOcc.cpp:698:60: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
698 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
intMsPGOcc.cpp:239:10: note: 'betaStarSamples_r' was declared here
239 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
intMsPGOcc.cpp:780:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
780 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples"));
| ~~~~~~^~~
intMsPGOcc.cpp:164:12: note: 'tmp_0' was declared here
164 | double tmp_0, tmp_02;
| ^~~~~
svcTMsPGOccNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c svcTMsPGOccNNGPPredict.cpp -o svcTMsPGOccNNGPPredict.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c svcTPGBinomNNGP.cpp -o svcTPGBinomNNGP.o
svcTPGBinomNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
sfMsPGOccNNGPPredict.cpp: In function 'SEXPREC* sfMsPGOccNNGPPredict(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
sfMsPGOccNNGPPredict.cpp:144:39: warning: 'nuIndx' may be used uninitialized [-Wmaybe-uninitialized]
144 | if(theta[s*nThetaq + nuIndx * q + ll] > nuMax[ll]){
| ~~~~~~~^~~
sfMsPGOccNNGPPredict.cpp:109:26: note: 'nuIndx' was declared here
109 | int nTheta, phiIndx, nuIndx, sigmaSqIndx;
| ^~~~~~
svcTMsPGOccNNGPPredict.cpp:9:9: warning: "R_NO_REMAP" redefined
9 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
lfJSDM.cpp: In function 'SEXPREC* lfJSDM(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
lfJSDM.cpp:264:21: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
264 | SET_VECTOR_ELT(result_r, 8, sigmaSqPsiSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lfJSDM.cpp:230:10: note: 'sigmaSqPsiSamples_r' was declared here
230 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
lfJSDM.cpp:265:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
265 | SET_VECTOR_ELT(result_r, 9, betaStarSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lfJSDM.cpp:231:10: note: 'betaStarSamples_r' was declared here
231 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
svcPGBinomNNGP.cpp: In function 'SEXPREC* svcPGBinomNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcPGBinomNNGP.cpp:730:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
730 | &REAL(sigmaSqPsiSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
svcPGBinomNNGP.cpp:240:10: note: 'sigmaSqPsiSamples_r' was declared here
240 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
svcPGBinomNNGP.cpp:732:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
732 | &REAL(betaStarSamples_r)[sPost*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcPGBinomNNGP.cpp:241:10: note: 'betaStarSamples_r' was declared here
241 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
svcPGBinomNNGP.cpp:582:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized]
582 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet)
| ^~~
svcPGBinomNNGP.cpp:324:12: note: 'logDet' was declared here
324 | double logDet;
| ^~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c svcTPGOccNNGP.cpp -o svcTPGOccNNGP.o
svcTPGOccNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c svcTPGOccNNGPPredict.cpp -o svcTPGOccNNGPPredict.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c tIntPGOcc.cpp -o tIntPGOcc.o
spPGOcc.cpp: In function 'SEXPREC* spPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spPGOcc.cpp:807:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
807 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spPGOcc.cpp:208:10: note: 'sigmaSqPSamples_r' was declared here
208 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spPGOcc.cpp:809:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
809 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spPGOcc.cpp:209:10: note: 'alphaStarSamples_r' was declared here
209 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spPGOcc.cpp:801:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
801 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
spPGOcc.cpp:217:10: note: 'sigmaSqPsiSamples_r' was declared here
217 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
spPGOcc.cpp:803:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
803 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spPGOcc.cpp:218:10: note: 'betaStarSamples_r' was declared here
218 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spPGOcc.cpp:918:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
918 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spPGOcc.cpp:238:12: note: 'tmp_0' was declared here
238 | double tmp_0, tmp_02;
| ^~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c tMsPGOcc.cpp -o tMsPGOcc.o
svcTPGOccNNGPPredict.cpp:9:9: warning: "R_NO_REMAP" redefined
9 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
tIntPGOcc.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
spMsPGOcc.cpp: In function 'SEXPREC* spMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spMsPGOcc.cpp:1041:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1041 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spMsPGOcc.cpp:291:10: note: 'sigmaSqPSamples_r' was declared here
291 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spMsPGOcc.cpp:1043:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1043 | &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spMsPGOcc.cpp:292:10: note: 'alphaStarSamples_r' was declared here
292 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spMsPGOcc.cpp:1047:36: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1047 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
spMsPGOcc.cpp:300:10: note: 'sigmaSqPsiSamples_r' was declared here
300 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
spMsPGOcc.cpp:1049:36: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1049 | &REAL(betaStarSamples_r)[sPost*nOccREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spMsPGOcc.cpp:301:10: note: 'betaStarSamples_r' was declared here
301 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spMsPGOcc.cpp:1168:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1168 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spMsPGOcc.cpp:184:12: note: 'tmp_0' was declared here
184 | double tmp_0, tmp_02;
| ^~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c tPGOcc.cpp -o tPGOcc.o
tMsPGOcc.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c util.cpp -o util.o
tPGOcc.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
lfMsPGOcc.cpp: In function 'SEXPREC* lfMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
lfMsPGOcc.cpp:926:59: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
926 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsPGOcc.cpp:280:10: note: 'sigmaSqPSamples_r' was declared here
280 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsPGOcc.cpp:927:61: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
927 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsPGOcc.cpp:281:10: note: 'alphaStarSamples_r' was declared here
281 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsPGOcc.cpp:930:61: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
930 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
lfMsPGOcc.cpp:289:10: note: 'sigmaSqPsiSamples_r' was declared here
289 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
lfMsPGOcc.cpp:931:60: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
931 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsPGOcc.cpp:290:10: note: 'betaStarSamples_r' was declared here
290 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsPGOcc.cpp:1023:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1023 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples"));
| ~~~~~~^~~
lfMsPGOcc.cpp:166:12: note: 'tmp_0' was declared here
166 | double tmp_0, tmp_02;
| ^~~~~
util.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
sfJSDMNNGP.cpp: In function 'SEXPREC* sfJSDMNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
sfJSDMNNGP.cpp:978:59: warning: 'betaCommSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
978 | F77_NAME(dcopy)(&pOcc, betaComm, &inc, &REAL(betaCommSamples_r)[sPost*pOcc], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:287:10: note: 'betaCommSamples_r' was declared here
287 | SEXP betaCommSamples_r;
| ^~~~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:981:60: warning: 'tauSqBetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
981 | F77_NAME(dcopy)(&pOcc, tauSqBeta, &inc, &REAL(tauSqBetaSamples_r)[sPost*pOcc], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:292:10: note: 'tauSqBetaSamples_r' was declared here
292 | SEXP tauSqBetaSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:984:56: warning: 'betaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
984 | F77_NAME(dcopy)(&pOccN, beta, &inc, &REAL(betaSamples_r)[sPost*pOccN], &inc);
| ~~~~^~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:298:10: note: 'betaSamples_r' was declared here
298 | SEXP betaSamples_r;
| ^~~~~~~~~~~~~
sfJSDMNNGP.cpp:993:50: warning: 'zSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
993 | F77_NAME(dcopy)(&JN, z, &inc, &REAL(zSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~
sfJSDMNNGP.cpp:305:10: note: 'zSamples_r' was declared here
305 | SEXP zSamples_r;
| ^~~~~~~~~~
sfJSDMNNGP.cpp:990:52: warning: 'psiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
990 | F77_NAME(dcopy)(&JN, psi, &inc, &REAL(psiSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~~~
sfJSDMNNGP.cpp:310:10: note: 'psiSamples_r' was declared here
310 | SEXP psiSamples_r;
| ^~~~~~~~~~~~
sfJSDMNNGP.cpp:987:55: warning: 'lambdaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
987 | F77_NAME(dcopy)(&Nq, lambda, &inc, &REAL(lambdaSamples_r)[sPost*Nq], &inc);
| ~~~~^~~~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:316:10: note: 'lambdaSamples_r' was declared here
316 | SEXP lambdaSamples_r;
| ^~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:996:50: warning: 'wSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
996 | F77_NAME(dcopy)(&Jq, w, &inc, &REAL(wSamples_r)[sPost*Jq], &inc);
| ~~~~^~~~~~~~~~~~
sfJSDMNNGP.cpp:321:10: note: 'wSamples_r' was declared here
321 | SEXP wSamples_r;
| ^~~~~~~~~~
sfJSDMNNGP.cpp:1007:65: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1007 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:327:10: note: 'sigmaSqPsiSamples_r' was declared here
327 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:1010:64: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1010 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:328:10: note: 'betaStarSamples_r' was declared here
328 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:1014:54: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1014 | F77_NAME(dcopy)(&JN, yWAIC, &inc, &REAL(likeSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:340:10: note: 'likeSamples_r' was declared here
340 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
sfJSDMNNGP.cpp:1002:79: warning: 'thetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1002 | F77_NAME(dcopy)(&nThetaqSave, &theta[phiIndx * q], &inc, &REAL(thetaSamples_r)[sPost*nThetaqSave], &inc);
| ~~~~^~~~~~~~~~~~~~~~
sfJSDMNNGP.cpp:429:10: note: 'thetaSamples_r' was declared here
429 | SEXP thetaSamples_r;
| ^~~~~~~~~~~~~~
svcMsPGOccNNGP.cpp: In function 'SEXPREC* svcMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcMsPGOccNNGP.cpp:1327:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1327 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcMsPGOccNNGP.cpp:373:10: note: 'sigmaSqPSamples_r' was declared here
373 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
svcMsPGOccNNGP.cpp:1328:63: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1328 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcMsPGOccNNGP.cpp:374:10: note: 'alphaStarSamples_r' was declared here
374 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcMsPGOccNNGP.cpp:1331:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1331 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
svcMsPGOccNNGP.cpp:382:10: note: 'sigmaSqPsiSamples_r' was declared here
382 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
svcMsPGOccNNGP.cpp:1332:62: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1332 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcMsPGOccNNGP.cpp:383:10: note: 'betaStarSamples_r' was declared here
383 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
svcMsPGOccNNGP.cpp:1451:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1451 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
svcMsPGOccNNGP.cpp:249:12: note: 'tmp_0' was declared here
249 | double tmp_0, tmp_02;
| ^~~~~
spPGOccNNGP.cpp: In function 'SEXPREC* spPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spPGOccNNGP.cpp:887:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
887 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spPGOccNNGP.cpp:262:10: note: 'sigmaSqPSamples_r' was declared here
262 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spPGOccNNGP.cpp:889:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
889 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spPGOccNNGP.cpp:263:10: note: 'alphaStarSamples_r' was declared here
263 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spPGOccNNGP.cpp:881:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
881 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
spPGOccNNGP.cpp:271:10: note: 'sigmaSqPsiSamples_r' was declared here
271 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
spPGOccNNGP.cpp:883:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
883 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spPGOccNNGP.cpp:272:10: note: 'betaStarSamples_r' was declared here
272 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spPGOccNNGP.cpp:703:9: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized]
703 | #pragma omp parallel for private (e, i, b) reduction(+:a)
| ^~~
spPGOccNNGP.cpp:400:12: note: 'a' was declared here
400 | double a, v, b, e, mu, var, aij;
| ^
stIntPGOccNNGP.cpp: In function 'SEXPREC* stIntPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
stIntPGOccNNGP.cpp:1285:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1285 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
stIntPGOccNNGP.cpp:310:10: note: 'etaSamples_r' was declared here
310 | SEXP etaSamples_r;
| ^~~~~~~~~~~~
stIntPGOccNNGP.cpp:1178:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1178 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
stIntPGOccNNGP.cpp:319:10: note: 'sigmaSqPSamples_r' was declared here
319 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
stIntPGOccNNGP.cpp:1180:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1180 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
stIntPGOccNNGP.cpp:320:10: note: 'alphaStarSamples_r' was declared here
320 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
stIntPGOccNNGP.cpp:1172:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1172 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
stIntPGOccNNGP.cpp:328:10: note: 'sigmaSqPsiSamples_r' was declared here
328 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
stIntPGOccNNGP.cpp:1174:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1174 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
stIntPGOccNNGP.cpp:329:10: note: 'betaStarSamples_r' was declared here
329 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
stIntPGOccNNGP.cpp:528:13: warning: 'sigmaSqTIndx' may be used uninitialized [-Wmaybe-uninitialized]
528 | theta[sigmaSqTIndx] = REAL(ar1Vals_r)[5];
| ^~~~~~~~~~~~
stIntPGOccNNGP.cpp:474:47: note: 'sigmaSqTIndx' was declared here
474 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx;
| ^~~~~~~~~~~~
stIntPGOccNNGP.cpp:529:13: warning: 'rhoIndx' may be used uninitialized [-Wmaybe-uninitialized]
529 | theta[rhoIndx] = REAL(ar1Vals_r)[4];
| ^~~~~~~
stIntPGOccNNGP.cpp:474:61: note: 'rhoIndx' was declared here
474 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx;
| ^~~~~~~
stIntPGOccNNGP.cpp:560:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized]
560 | double logDet;
| ^~~~~~
stIntPGOccNNGP.cpp:492:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized]
492 | double a, v, b, e, mu, var, aij;
| ^
spMsPGOccNNGP.cpp: In function 'SEXPREC* spMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spMsPGOccNNGP.cpp:1079:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1079 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spMsPGOccNNGP.cpp:338:10: note: 'sigmaSqPSamples_r' was declared here
338 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spMsPGOccNNGP.cpp:1081:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1081 | &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spMsPGOccNNGP.cpp:339:10: note: 'alphaStarSamples_r' was declared here
339 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spMsPGOccNNGP.cpp:1085:36: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1085 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
spMsPGOccNNGP.cpp:347:10: note: 'sigmaSqPsiSamples_r' was declared here
347 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
spMsPGOccNNGP.cpp:1087:36: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1087 | &REAL(betaStarSamples_r)[sPost*nOccREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spMsPGOccNNGP.cpp:348:10: note: 'betaStarSamples_r' was declared here
348 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spMsPGOccNNGP.cpp:498:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized]
498 | double logDet;
| ^~~~~~
spMsPGOccNNGP.cpp:467:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized]
467 | double a, v, b, e, mu, var, aij;
| ^
spMsPGOccNNGP.cpp:1207:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1207 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spMsPGOccNNGP.cpp:233:12: note: 'tmp_0' was declared here
233 | double tmp_0, tmp_02;
| ^~~~~
stMsPGOccNNGP.cpp: In function 'SEXPREC* stMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
stMsPGOccNNGP.cpp:1510:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1510 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:393:10: note: 'sigmaSqPSamples_r' was declared here
393 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:1511:63: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1511 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:394:10: note: 'alphaStarSamples_r' was declared here
394 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:1514:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1514 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:402:10: note: 'sigmaSqPsiSamples_r' was declared here
402 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:1515:62: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1515 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:403:10: note: 'betaStarSamples_r' was declared here
403 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:1640:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1640 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:417:10: note: 'etaSamples_r' was declared here
417 | SEXP etaSamples_r;
| ^~~~~~~~~~~~
stMsPGOccNNGP.cpp:1641:21: warning: 'ar1ThetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1641 | SET_VECTOR_ELT(result_r, ar1Ind + 1, ar1ThetaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:418:10: note: 'ar1ThetaSamples_r' was declared here
418 | SEXP ar1ThetaSamples_r;
| ^~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:1664:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1664 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
stMsPGOccNNGP.cpp:257:12: note: 'tmp_0' was declared here
257 | double tmp_0, tmp_02;
| ^~~~~
sfMsPGOccNNGP.cpp: In function 'SEXPREC* sfMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
sfMsPGOccNNGP.cpp:1251:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1251 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsPGOccNNGP.cpp:367:10: note: 'sigmaSqPSamples_r' was declared here
367 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsPGOccNNGP.cpp:1252:63: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1252 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsPGOccNNGP.cpp:368:10: note: 'alphaStarSamples_r' was declared here
368 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsPGOccNNGP.cpp:1255:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1255 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
sfMsPGOccNNGP.cpp:376:10: note: 'sigmaSqPsiSamples_r' was declared here
376 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
sfMsPGOccNNGP.cpp:1256:62: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1256 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsPGOccNNGP.cpp:377:10: note: 'betaStarSamples_r' was declared here
377 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
stPGOccNNGP.cpp: In function 'SEXPREC* stPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
stPGOccNNGP.cpp:1224:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1224 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
svcTIntPGOccNNGP.cpp: In function 'SEXPREC* svcTIntPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcTIntPGOccNNGP.cpp:1373:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1373 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
svcPGOccNNGP.cpp: In function 'SEXPREC* svcPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcPGOccNNGP.cpp:982:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
982 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
stPGOccNNGP.cpp:291:10: note: 'etaSamples_r' was declared here
291 | SEXP etaSamples_r;
| ^~~~~~~~~~~~
svcTIntPGOccNNGP.cpp:318:10: note: 'etaSamples_r' was declared here
318 | SEXP etaSamples_r;
| ^~~~~~~~~~~~
svcPGOccNNGP.cpp:278:10: note: 'sigmaSqPSamples_r' was declared here
278 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
svcPGOccNNGP.cpp:984:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
984 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcPGOccNNGP.cpp:279:10: note: 'alphaStarSamples_r' was declared here
279 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
stPGOccNNGP.cpp:1118:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1118 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
stPGOccNNGP.cpp:300:10: note: 'sigmaSqPSamples_r' was declared here
300 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
svcTIntPGOccNNGP.cpp:1249:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1249 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcTIntPGOccNNGP.cpp:327:10: note: 'sigmaSqPSamples_r' was declared here
327 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
svcPGOccNNGP.cpp:976:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
976 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
svcPGOccNNGP.cpp:287:10: note: 'sigmaSqPsiSamples_r' was declared here
287 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
stPGOccNNGP.cpp:1120:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1120 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
stPGOccNNGP.cpp:301:10: note: 'alphaStarSamples_r' was declared here
301 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcTIntPGOccNNGP.cpp:1251:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1251 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcTIntPGOccNNGP.cpp:328:10: note: 'alphaStarSamples_r' was declared here
328 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcPGOccNNGP.cpp:978:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
978 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcPGOccNNGP.cpp:288:10: note: 'betaStarSamples_r' was declared here
288 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
stPGOccNNGP.cpp:1112:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1112 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
stPGOccNNGP.cpp:309:10: note: 'sigmaSqPsiSamples_r' was declared here
309 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
sfMsPGOccNNGP.cpp:1374:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1374 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
svcTIntPGOccNNGP.cpp:1243:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1243 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
sfMsPGOccNNGP.cpp:242:12: note: 'tmp_0' was declared here
242 | double tmp_0, tmp_02;
| ^~~~~
svcTIntPGOccNNGP.cpp:336:10: note: 'sigmaSqPsiSamples_r' was declared here
336 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
stPGOccNNGP.cpp:1114:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1114 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
stPGOccNNGP.cpp:310:10: note: 'betaStarSamples_r' was declared here
310 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
stPGOccNNGP.cpp:481:13: warning: 'sigmaSqTIndx' may be used uninitialized [-Wmaybe-uninitialized]
481 | theta[sigmaSqTIndx] = REAL(ar1Vals_r)[5];
| ^~~~~~~~~~~~
svcTIntPGOccNNGP.cpp:1245:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1245 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
stPGOccNNGP.cpp:427:47: note: 'sigmaSqTIndx' was declared here
427 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx;
| ^~~~~~~~~~~~
svcTIntPGOccNNGP.cpp:337:10: note: 'betaStarSamples_r' was declared here
337 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
stPGOccNNGP.cpp:482:13: warning: 'rhoIndx' may be used uninitialized [-Wmaybe-uninitialized]
482 | theta[rhoIndx] = REAL(ar1Vals_r)[4];
| ^~~~~~~
stPGOccNNGP.cpp:427:61: note: 'rhoIndx' was declared here
427 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx;
| ^~~~~~~
svcTIntPGOccNNGP.cpp:565:13: warning: 'sigmaSqTIndx' may be used uninitialized [-Wmaybe-uninitialized]
565 | theta[sigmaSqTIndx] = REAL(ar1Vals_r)[5];
| ^~~~~~~~~~~~
svcTIntPGOccNNGP.cpp:486:47: note: 'sigmaSqTIndx' was declared here
486 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx;
| ^~~~~~~~~~~~
svcTIntPGOccNNGP.cpp:566:13: warning: 'rhoIndx' may be used uninitialized [-Wmaybe-uninitialized]
566 | theta[rhoIndx] = REAL(ar1Vals_r)[4];
| ^~~~~~~
svcTIntPGOccNNGP.cpp:486:61: note: 'rhoIndx' was declared here
486 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx;
| ^~~~~~~
stPGOccNNGP.cpp:513:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized]
513 | double logDet;
| ^~~~~~
svcPGOccNNGP.cpp:794:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized]
794 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet)
| ^~~
svcPGOccNNGP.cpp:408:12: note: 'logDet' was declared here
408 | double logDet;
| ^~~~~~
stPGOccNNGP.cpp:445:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized]
445 | double a, v, b, e, mu, var, aij;
| ^
svcTIntPGOccNNGP.cpp:935:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized]
935 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet)
| ^~~
svcTIntPGOccNNGP.cpp:504:12: note: 'logDet' was declared here
504 | double logDet;
| ^~~~~~
svcPGOccNNGP.cpp:1096:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1096 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
svcPGOccNNGP.cpp:308:12: note: 'tmp_0' was declared here
308 | double tmp_0, tmp_02;
| ^~~~~
svcTPGOccNNGP.cpp: In function 'SEXPREC* svcTPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcTPGOccNNGP.cpp:1330:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1330 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
svcTPGOccNNGP.cpp:300:10: note: 'etaSamples_r' was declared here
300 | SEXP etaSamples_r;
| ^~~~~~~~~~~~
svcTPGOccNNGP.cpp:1205:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1205 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcTPGOccNNGP.cpp:309:10: note: 'sigmaSqPSamples_r' was declared here
309 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
svcTPGOccNNGP.cpp:1207:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1207 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcTPGOccNNGP.cpp:310:10: note: 'alphaStarSamples_r' was declared here
310 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
tPGOcc.cpp: In function 'SEXPREC* tPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
tPGOcc.cpp:912:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
912 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tIntPGOcc.cpp: In function 'SEXPREC* tIntPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
tIntPGOcc.cpp:992:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
992 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
svcTPGOccNNGP.cpp:1199:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1199 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
tIntPGOcc.cpp:232:10: note: 'etaSamples_r' was declared here
232 | SEXP etaSamples_r;
| ^~~~~~~~~~~~
svcTPGOccNNGP.cpp:318:10: note: 'sigmaSqPsiSamples_r' was declared here
318 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
svcTPGOccNNGP.cpp:1201:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1201 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcTPGOccNNGP.cpp:319:10: note: 'betaStarSamples_r' was declared here
319 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
tIntPGOcc.cpp:896:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
896 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcTPGOccNNGP.cpp:518:13: warning: 'sigmaSqTIndx' may be used uninitialized [-Wmaybe-uninitialized]
518 | theta[sigmaSqTIndx] = REAL(ar1Vals_r)[5];
| ^~~~~~~~~~~~
tIntPGOcc.cpp:241:10: note: 'sigmaSqPSamples_r' was declared here
241 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
svcTPGOccNNGP.cpp:439:47: note: 'sigmaSqTIndx' was declared here
439 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx;
| ^~~~~~~~~~~~
svcTPGOccNNGP.cpp:519:13: warning: 'rhoIndx' may be used uninitialized [-Wmaybe-uninitialized]
519 | theta[rhoIndx] = REAL(ar1Vals_r)[4];
| ^~~~~~~
svcTPGOccNNGP.cpp:439:61: note: 'rhoIndx' was declared here
439 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx;
| ^~~~~~~
tIntPGOcc.cpp:898:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
898 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
tIntPGOcc.cpp:242:10: note: 'alphaStarSamples_r' was declared here
242 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
tIntPGOcc.cpp:890:36: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
890 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
tIntPGOcc.cpp:250:10: note: 'sigmaSqPsiSamples_r' was declared here
250 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
svcTPGOccNNGP.cpp:894:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized]
894 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet)
| ^~~
svcTPGOccNNGP.cpp:457:12: note: 'logDet' was declared here
457 | double logDet;
| ^~~~~~
tIntPGOcc.cpp:892:36: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
892 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
tIntPGOcc.cpp:251:10: note: 'betaStarSamples_r' was declared here
251 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
tIntPGOcc.cpp:993:21: warning: 'thetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
993 | SET_VECTOR_ELT(result_r, ar1Ind + 1, thetaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tIntPGOcc.cpp:405:10: note: 'thetaSamples_r' was declared here
405 | SEXP thetaSamples_r;
| ^~~~~~~~~~~~~~
svcTPGBinomNNGP.cpp: In function 'SEXPREC* svcTPGBinomNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcTPGBinomNNGP.cpp:952:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
952 | &REAL(sigmaSqPsiSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
svcTPGBinomNNGP.cpp:261:10: note: 'sigmaSqPsiSamples_r' was declared here
261 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
svcTPGBinomNNGP.cpp:954:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
954 | &REAL(betaStarSamples_r)[sPost*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcTPGBinomNNGP.cpp:262:10: note: 'betaStarSamples_r' was declared here
262 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp: In function 'SEXPREC* svcTMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcTMsPGOccNNGP.cpp:1632:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1632 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcTPGBinomNNGP.cpp:1050:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1050 | SET_VECTOR_ELT(result_r, tmp_0, etaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
svcTPGBinomNNGP.cpp:274:10: note: 'etaSamples_r' was declared here
274 | SEXP etaSamples_r;
| ^~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:411:10: note: 'sigmaSqPSamples_r' was declared here
411 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
svcTPGBinomNNGP.cpp:681:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized]
681 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet)
| ^~~
svcTPGBinomNNGP.cpp:369:12: note: 'logDet' was declared here
369 | double logDet;
| ^~~~~~
svcTMsPGOccNNGP.cpp:1633:63: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1633 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:412:10: note: 'alphaStarSamples_r' was declared here
412 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:1636:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1636 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:420:10: note: 'sigmaSqPsiSamples_r' was declared here
420 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:1637:62: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1637 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:421:10: note: 'betaStarSamples_r' was declared here
421 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:1766:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1766 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:435:10: note: 'etaSamples_r' was declared here
435 | SEXP etaSamples_r;
| ^~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:1767:21: warning: 'ar1ThetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1767 | SET_VECTOR_ELT(result_r, ar1Ind + 1, ar1ThetaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:436:10: note: 'ar1ThetaSamples_r' was declared here
436 | SEXP ar1ThetaSamples_r;
| ^~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:1790:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1790 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
svcTMsPGOccNNGP.cpp:271:12: note: 'tmp_0' was declared here
271 | double tmp_0, tmp_02;
| ^~~~~
tPGOcc.cpp:207:10: note: 'etaSamples_r' was declared here
207 | SEXP etaSamples_r;
| ^~~~~~~~~~~~
tPGOcc.cpp:819:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
819 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
tPGOcc.cpp:216:10: note: 'sigmaSqPSamples_r' was declared here
216 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
tPGOcc.cpp:821:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
821 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
tPGOcc.cpp:217:10: note: 'alphaStarSamples_r' was declared here
217 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
tPGOcc.cpp:813:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
813 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
tPGOcc.cpp:225:10: note: 'sigmaSqPsiSamples_r' was declared here
225 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
tPGOcc.cpp:815:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
815 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
tPGOcc.cpp:226:10: note: 'betaStarSamples_r' was declared here
226 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
tPGOcc.cpp:913:21: warning: 'thetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
913 | SET_VECTOR_ELT(result_r, ar1Ind + 1, thetaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tPGOcc.cpp:350:10: note: 'thetaSamples_r' was declared here
350 | SEXP thetaSamples_r;
| ^~~~~~~~~~~~~~
tMsPGOcc.cpp: In function 'SEXPREC* tMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
tMsPGOcc.cpp:1146:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1146 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spPGOccNNGP.cpp:998:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
998 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spPGOccNNGP.cpp:292:12: note: 'tmp_0' was declared here
292 | double tmp_0, tmp_02;
| ^~~~~
tMsPGOcc.cpp:278:10: note: 'etaSamples_r' was declared here
278 | SEXP etaSamples_r;
| ^~~~~~~~~~~~
tMsPGOcc.cpp:1147:21: warning: 'thetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1147 | SET_VECTOR_ELT(result_r, ar1Ind + 1, thetaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tMsPGOcc.cpp:279:10: note: 'thetaSamples_r' was declared here
279 | SEXP thetaSamples_r;
| ^~~~~~~~~~~~~~
tMsPGOcc.cpp:1033:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1033 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
tMsPGOcc.cpp:302:10: note: 'sigmaSqPSamples_r' was declared here
302 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
tMsPGOcc.cpp:1034:63: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1034 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
tMsPGOcc.cpp:303:10: note: 'alphaStarSamples_r' was declared here
303 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
tMsPGOcc.cpp:1037:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1037 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~~
tMsPGOcc.cpp:311:10: note: 'sigmaSqPsiSamples_r' was declared here
311 | SEXP sigmaSqPsiSamples_r;
| ^~~~~~~~~~~~~~~~~~~
tMsPGOcc.cpp:1038:62: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1038 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
tMsPGOcc.cpp:312:10: note: 'betaStarSamples_r' was declared here
312 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
tMsPGOcc.cpp:1168:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1168 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples"));
| ~~~~~~^~~
tMsPGOcc.cpp:183:12: note: 'tmp_0' was declared here
183 | double tmp_0, tmp_02;
| ^~~~~
g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o spOccupancy.so PGOcc.o idist.o init.o intMsPGOcc.o intPGOcc.o lfJSDM.o lfMsPGOcc.o mkSpCov.o msPGOcc.o nn.o postHocLM.o rpg.o sfJSDMNNGP.o sfMsPGOccNNGP.o sfMsPGOccNNGPPredict.o spIntPGOcc.o spIntPGOccNNGP.o spMsPGOcc.o spMsPGOccNNGP.o spMsPGOccNNGPPredict.o spMsPGOccPredict.o spPGOcc.o spPGOccNNGP.o spPGOccNNGPPredict.o spPGOccPredict.o stIntPGOccNNGP.o stMsPGOccNNGP.o stPGOccNNGP.o stPGOccNNGPPredict.o svcMsPGOccNNGP.o svcMsPGOccNNGPPredict.o svcPGBinomNNGP.o svcPGOccNNGP.o svcPGOccNNGPPredict.o svcTIntPGOccNNGP.o svcTMsPGOccNNGP.o svcTMsPGOccNNGPPredict.o svcTPGBinomNNGP.o svcTPGOccNNGP.o svcTPGOccNNGPPredict.o tIntPGOcc.o tMsPGOcc.o tPGOcc.o util.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/spOccupancy/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/spOccupancy/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/spOccupancy/src'
installing to /data/gannet/ripley/R/packages/tests-devel/spOccupancy.Rcheck/00LOCK-spOccupancy/00new/spOccupancy/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (spOccupancy)