* installing *source* package ‘spBFA’ ...
** package ‘spBFA’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (GCC) 14.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/spBFA/src'
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c CovarianceFunctions.cpp -o CovarianceFunctions.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c DIAG_Conversion.cpp -o DIAG_Conversion.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c DIAG_GetLogLik.cpp -o DIAG_GetLogLik.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c DIAG_SamplePPD.cpp -o DIAG_SamplePPD.o
DIAG_GetLogLik.cpp: In function 'arma::colvec GetLogLik(Rcpp::List, Rcpp::List, int, bool)':
DIAG_GetLogLik.cpp:71:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
71 | for (arma::uword f = 0; f < O; f++) {
| ~~^~~
DIAG_GetLogLik.cpp: In function 'double GetLogLikMean(Rcpp::List, Rcpp::List)':
DIAG_GetLogLik.cpp:197:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
197 | for (arma::uword f = 0; f < O; f++) {
| ~~^~~
DIAG_SamplePPD.cpp: In function 'arma::mat SamplePPD(Rcpp::List, Rcpp::List, int, bool)':
DIAG_SamplePPD.cpp:64:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
64 | for (arma::uword f = 0; f < O; f++) {
| ~~^~~
DIAG_SamplePPD.cpp:91:35: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
91 | for (arma::uword t = 0; t < Nu; t++) {
| ~~^~~~
DIAG_SamplePPD.cpp:92:37: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
92 | for (arma::uword i = 0; i < M; i++) {
| ~~^~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c DistributionFunctions.cpp -o DistributionFunctions.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c MCMC_Conversion.cpp -o MCMC_Conversion.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c MCMC_Samplers.cpp -o MCMC_Samplers.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c MCMC_Utilities.cpp -o MCMC_Utilities.o
MCMC_Samplers.cpp: In function 'datobj SampleUpper(datobj, para, dataug)':
MCMC_Samplers.cpp:54:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
54 | for (arma::uword i = 0; i < NAbove; i++) {
| ~~^~~~~~~~
MCMC_Samplers.cpp: In function 'datobj SampleLower(datobj, para, dataug)':
MCMC_Samplers.cpp:89:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
89 | for (arma::uword i = 0; i < NBelow; i++) {
| ~~^~~~~~~~
MCMC_Samplers.cpp: In function 'std::pair<datobj, para> SampleY(datobj, para, dataug)':
MCMC_Samplers.cpp:129:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
129 | for (arma::uword f = 0; f < O; f++) {
| ~~^~~
MCMC_Samplers.cpp: In function 'para SampleSigma2(datobj, para, hypara)':
MCMC_Samplers.cpp:193:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
193 | for (arma::uword c = 0; c < (O - C); c++) {
| ~~^~~~~~~~~
MCMC_Samplers.cpp:199:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
199 | for (arma::uword i = 0; i < M; i++) {
| ~~^~~
MCMC_Samplers.cpp: In function 'para SampleBeta(datobj, para, hypara)':
MCMC_Samplers.cpp:409:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
409 | for (arma::uword t = 0; t < Nu; t++) {
| ~~^~~~
MCMC_Samplers.cpp: In function 'para SampleEta(datobj, para, hypara)':
MCMC_Samplers.cpp:463:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
463 | for (arma::uword t = 0; t < Nu; t++) {
| ~~^~~~
MCMC_Samplers.cpp: In function 'para SampleDelta(datobj, para, hypara)':
MCMC_Samplers.cpp:526:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
526 | for (arma::uword h = 0; h < K; h++) {
| ~~^~~
MCMC_Samplers.cpp:538:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
538 | for (arma::uword j = h; j < K; j++) {
| ~~^~~
MCMC_Samplers.cpp:567:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
567 | for (arma::uword j = 0; j < K; j++) {
| ~~^~~
MCMC_Samplers.cpp: In function 'std::pair<para, metrobj> SampleRho(datobj, para, hypara, metrobj)':
MCMC_Samplers.cpp:673:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
673 | for (arma::uword j = 0; j < K; j++) {
| ~~^~~
MCMC_Samplers.cpp:680:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
680 | for (arma::uword l = 0; l < UpperL; l++) {
| ~~^~~~~~~~
MCMC_Samplers.cpp: In function 'para SampleKappa(datobj, para, hypara)':
MCMC_Samplers.cpp:752:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
752 | for (arma::uword j = 0; j < K; j++) {
| ~~^~~
MCMC_Samplers.cpp:754:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
754 | for (arma::uword l = 0; l < UpperL; l++) {
| ~~^~~~~~~~
MCMC_Samplers.cpp: In function 'para SampleAlpha(datobj, para)':
MCMC_Samplers.cpp:817:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
817 | for (arma::uword j = 0; j < K; j++) {
| ~~^~~
MCMC_Samplers.cpp:825:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
825 | for (arma::uword l = 0; l < UpperL; l++) {
| ~~^~~~~~~~
MCMC_Samplers.cpp:883:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
883 | for (arma::uword j = 0; j < K; j++) {
| ~~^~~
MCMC_Samplers.cpp:893:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
893 | for (arma::uword t = 0; t < Nu; t++) {
| ~~^~~~
MCMC_Samplers.cpp:898:35: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
898 | for (arma::uword h = 0; h < (K - 1); h++) LambdaSum += LambdaMinusJ.col(h) * BigPhiMinusJ(h, t);
| ~~^~~~~~~~~
MCMC_Samplers.cpp: In function 'para SampleZ(datobj, para)':
MCMC_Samplers.cpp:950:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
950 | for (arma::uword j = 0; j < K; j++) {
| ~~^~~
MCMC_Samplers.cpp:958:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
958 | for (arma::uword o = 0; o < O; o++) {
| ~~^~~
MCMC_Samplers.cpp:961:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
961 | for (arma::uword i = 0; i < M; i++) {
| ~~^~~
MCMC_Samplers.cpp:968:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
968 | for (arma::uword l = 0; l < UpperL; l++) {
| ~~^~~~~~~~
MCMC_Samplers.cpp: In function 'para SampleXi(datobj, para)':
MCMC_Samplers.cpp:1035:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
1035 | for (arma::uword j = 0; j < K; j++) {
| ~~^~~
MCMC_Samplers.cpp:1044:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
1044 | for (arma::uword o = 0; o < O; o++) {
| ~~^~~
MCMC_Samplers.cpp:1049:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
1049 | for (arma::uword i = 0; i < M; i++) {
| ~~^~~
MCMC_Samplers.cpp:1061:35: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
1061 | for (arma::uword l = 0; l < UpperL; l++) {
| ~~^~~~~~~~
MCMC_Samplers.cpp:1110:43: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
1110 | for (arma::uword seq = 0; seq < UpperL; seq++) SeqLStarJ(seq) = seq;
| ~~~~^~~~~~~~
MCMC_Samplers.cpp: In function 'para SampleTheta(datobj, para)':
MCMC_Samplers.cpp:1171:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
1171 | for (arma::uword j = 0; j < K; j++) {
| ~~^~~
MCMC_Samplers.cpp:1183:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
1183 | for (arma::uword l = 0; l < UpperL; l++) {
| ~~^~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c MCMC_bfa_sp.cpp -o MCMC_bfa_sp.o
MCMC_Samplers.cpp: In function 'para SampleU(datobj, para)':
MCMC_Samplers.cpp:1251:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
1251 | for (arma::uword j = 0; j < K; j++) {
| ~~^~~
MCMC_Samplers.cpp:1253:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
1253 | for (arma::uword o = 0; o < O; o++) {
| ~~^~~
MCMC_Samplers.cpp:1254:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
1254 | for (arma::uword i = 0; i < M; i++) {
| ~~^~~
MCMC_Utilities.cpp: In function 'arma::colvec StoreSamples(datobj, para)':
MCMC_Utilities.cpp:139:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
139 | for (arma::uword o = 0; o < O; o++) {
| ~~^~~
MCMC_Utilities.cpp:140:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
140 | for (arma::uword i = 0; i < M; i++) {
| ~~^~~
MCMC_Utilities.cpp:142:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
142 | for (arma::uword j = 0; j < K; j++) {
| ~~^~~
MCMC_Utilities.cpp:148:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
148 | for (arma::uword t = 0; t < Nu; t++) {
| ~~^~~~
MCMC_Utilities.cpp:149:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
149 | for (arma::uword j = 0; j < K; j++) {
| ~~^~~
MCMC_Utilities.cpp:154:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
154 | for (arma::uword c = 0; c < (O - C); c++) {
| ~~^~~~~~~~~
MCMC_Utilities.cpp:155:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
155 | for (arma::uword i = 0; i < M; i++) {
| ~~^~~
MCMC_Utilities.cpp:160:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
160 | for (arma::uword i = 0; i < O; i++) {
| ~~^~~
MCMC_Utilities.cpp:166:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
166 | for (arma::uword j = 0; j < K; j++) {
| ~~^~~
MCMC_Utilities.cpp:170:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
170 | for (arma::uword i = 0; i < K; i++) {
| ~~^~~
MCMC_Utilities.cpp:178:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
178 | for (arma::uword o = 0; o < O; o++) {
| ~~^~~
MCMC_Utilities.cpp:179:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
179 | for (arma::uword i = 0; i < M; i++) {
| ~~^~~
MCMC_Utilities.cpp:181:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
181 | for (arma::uword j = 0; j < K; j++) {
| ~~^~~
MCMC_Utilities.cpp:189:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
189 | for (arma::uword p = 0; p < P; p++) {
| ~~^~~
MCMC_Samplers.cpp: In function 'para SampleZ(datobj, para)':
MCMC_Samplers.cpp:974:22: warning: 'ZOIJL' may be used uninitialized [-Wmaybe-uninitialized]
974 | ZJ(l, Index) = ZOIJL;
| ~~~~~~~~~~~~~^~~~~~~
MCMC_Samplers.cpp:971:16: note: 'ZOIJL' was declared here
971 | double ZOIJL;
| ^~~~~
MCMC_Samplers.cpp: In function 'para SampleDelta(datobj, para, hypara)':
MCMC_Samplers.cpp:581:30: warning: 'tThetaTheta' may be used uninitialized [-Wmaybe-uninitialized]
581 | double Rate = A2 + 0.5 * tThetaTheta;
| ~~~~^~~~~~~~~~~~~
MCMC_Samplers.cpp:571:14: note: 'tThetaTheta' was declared here
571 | double tThetaTheta;
| ^~~~~~~~~~~
MCMC_Samplers.cpp:547:47: warning: 'tThetaTheta' may be used uninitialized [-Wmaybe-uninitialized]
547 | Resids += arma::as_scalar(tThetaTheta * arma::prod(DeltaMinusH(arma::span(0, j))));
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MCMC_Samplers.cpp:540:16: note: 'tThetaTheta' was declared here
540 | double tThetaTheta;
| ^~~~~~~~~~~
MCMC_Samplers.cpp: In function 'para SampleXi(datobj, para)':
MCMC_Samplers.cpp:1115:22: warning: 'XiOIJ' may be used uninitialized [-Wmaybe-uninitialized]
1115 | Xi(Index, j) = XiOIJ;
| ~~~~~~~~~~~~~^~~~~~~
MCMC_Samplers.cpp:1104:21: note: 'XiOIJ' was declared here
1104 | arma::uword XiOIJ;
| ^~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c PRED_Conversion.cpp -o PRED_Conversion.o
MCMC_Samplers.cpp: In function 'para SampleTheta(datobj, para)':
MCMC_Samplers.cpp:1213:19: warning: 'ThetaJL' may be used uninitialized [-Wmaybe-uninitialized]
1213 | Theta(l, j) = ThetaJL;
| ~~~~~~~~~~~~^~~~~~~~~
MCMC_Samplers.cpp:1190:14: note: 'ThetaJL' was declared here
1190 | double ThetaJL;
| ^~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c PRED_EtaKrigging.cpp -o PRED_EtaKrigging.o
PRED_EtaKrigging.cpp: In function 'arma::mat EtaKrigging(Rcpp::List, Rcpp::List, int, bool)':
PRED_EtaKrigging.cpp:50:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
50 | for (arma::uword s = 0; s < NKeep; s++) {
| ~~^~~~~~~
PRED_EtaKrigging.cpp:56:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
56 | for (arma::uword i = 0; i < K; i++) {
| ~~^~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c PRED_YKrigging.cpp -o PRED_YKrigging.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c Play.cpp -o Play.o
PRED_YKrigging.cpp: In function 'arma::cube YKrigging(Rcpp::List, Rcpp::List, arma::mat, int, bool)':
PRED_YKrigging.cpp:48:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
48 | for (arma::uword s = 0; s < NKeep; s++) {
| ~~^~~~~~~
PRED_YKrigging.cpp:59:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
59 | for (arma::uword n = 0; n < NNewVisits; n++) {
| ~~^~~~~~~~~~~~
PRED_YKrigging.cpp:67:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
67 | for (arma::uword f = 0; f < O; f++) {
| ~~^~~
PRED_YKrigging.cpp:94:37: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
94 | for (arma::uword i = 0; i < M; i++) PredMat(i, f) = rbinomRcpp(TrialsVec(i), Pi(i));
| ~~^~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c UtilityFunctions.cpp -o UtilityFunctions.o
UtilityFunctions.cpp: In function 'arma::colvec GetLStarJ(const arma::mat&, const arma::cube&, int, int, int)':
UtilityFunctions.cpp:11:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
11 | for (arma::uword j = 0; j < K; j++) {
| ~~^~~
UtilityFunctions.cpp:14:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
14 | for (arma::uword o = 0; o < O; o++) {
| ~~^~~
UtilityFunctions.cpp:15:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
15 | for (arma::uword i = 0; i < M; i++) {
| ~~^~~
UtilityFunctions.cpp: In function 'arma::mat GetLambda(const arma::mat&, const arma::umat&, int, int, int)':
UtilityFunctions.cpp:33:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
33 | for (arma::uword o = 0; o < O; o++) {
| ~~^~~
UtilityFunctions.cpp:34:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
34 | for (arma::uword i = 0; i < M; i++) {
| ~~^~~
UtilityFunctions.cpp:36:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
36 | for (arma::uword j = 0; j < K; j++) {
| ~~^~~
UtilityFunctions.cpp: In function 'arma::cube GetWeights(const arma::cube&, int, int, int, int)':
UtilityFunctions.cpp:54:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
54 | for (arma::uword j = 0; j < K; j++) {
| ~~^~~
UtilityFunctions.cpp:55:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
55 | for (arma::uword o = 0; o < O; o++) {
| ~~^~~
UtilityFunctions.cpp:56:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
56 | for (arma::uword i = 0; i < M; i++) {
| ~~^~~
UtilityFunctions.cpp:58:35: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
58 | for (arma::uword l = 0; l < L; l ++) {
| ~~^~~
UtilityFunctions.cpp:64:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
64 | for (arma::uword j = 0; j < K; j++) {
| ~~^~~
UtilityFunctions.cpp:65:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
65 | for (arma::uword o = 0; o < O; o++) {
| ~~^~~
UtilityFunctions.cpp:66:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
66 | for (arma::uword i = 0; i < M; i++) {
| ~~^~~
UtilityFunctions.cpp:68:35: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
68 | for (arma::uword l = 0; l < L; l ++) {
| ~~^~~
UtilityFunctions.cpp: In function 'arma::cube GetlogWeights(const arma::cube&, int, int, int, int)':
UtilityFunctions.cpp:87:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
87 | for (arma::uword j = 0; j < K; j++) {
| ~~^~~
UtilityFunctions.cpp:88:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
88 | for (arma::uword o = 0; o < O; o++) {
| ~~^~~
UtilityFunctions.cpp:89:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
89 | for (arma::uword i = 0; i < M; i++) {
| ~~^~~
UtilityFunctions.cpp:91:35: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
91 | for (arma::uword l = 0; l < L; l ++) {
| ~~^~~
UtilityFunctions.cpp:98:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
98 | for (arma::uword j = 0; j < K; j++) {
| ~~^~~
UtilityFunctions.cpp:99:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
99 | for (arma::uword o = 0; o < O; o++) {
| ~~^~~
UtilityFunctions.cpp:100:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
100 | for (arma::uword i = 0; i < M; i++) {
| ~~^~~
UtilityFunctions.cpp:102:35: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
102 | for (arma::uword l = 0; l < L; l ++) {
| ~~^~~
g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o spBFA.so CovarianceFunctions.o DIAG_Conversion.o DIAG_GetLogLik.o DIAG_SamplePPD.o DistributionFunctions.o MCMC_Conversion.o MCMC_Samplers.o MCMC_Utilities.o MCMC_bfa_sp.o PRED_Conversion.o PRED_EtaKrigging.o PRED_YKrigging.o Play.o RcppExports.o UtilityFunctions.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/spBFA/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/spBFA/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/spBFA/src'
installing to /data/gannet/ripley/R/packages/tests-devel/spBFA.Rcheck/00LOCK-spBFA/00new/spBFA/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (spBFA)