* installing *source* package ‘spAbundance’ ...
** package ‘spAbundance’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (GCC) 14.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/spAbundance/src'
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c DS.cpp -o DS.o
DS.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
DS.cpp: In function 'SEXPREC* DS(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
DS.cpp:774:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
774 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
DS.cpp:204:10: note: 'sigmaSqPSamples_r' was declared here
204 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
DS.cpp:776:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
776 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
DS.cpp:205:10: note: 'alphaStarSamples_r' was declared here
205 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
DS.cpp:768:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
768 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
DS.cpp:213:10: note: 'sigmaSqMuSamples_r' was declared here
213 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
DS.cpp:770:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
770 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
DS.cpp:214:10: note: 'betaStarSamples_r' was declared here
214 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
DS.cpp:868:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
868 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
DS.cpp:236:12: note: 'tmp_0' was declared here
236 | double tmp_0, tmp_02;
| ^~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c NMix.cpp -o NMix.o
NMix.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
NMix.cpp: In function 'SEXPREC* NMix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
NMix.cpp:616:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
616 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
NMix.cpp:201:10: note: 'sigmaSqPSamples_r' was declared here
201 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
NMix.cpp:618:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
618 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
NMix.cpp:202:10: note: 'alphaStarSamples_r' was declared here
202 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
NMix.cpp:610:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
610 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
NMix.cpp:210:10: note: 'sigmaSqMuSamples_r' was declared here
210 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
NMix.cpp:612:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
612 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
NMix.cpp:211:10: note: 'betaStarSamples_r' was declared here
211 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
NMix.cpp:708:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
708 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
NMix.cpp:222:12: note: 'tmp_0' was declared here
222 | double tmp_0, tmp_02;
| ^~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c abund.cpp -o abund.o
abund.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
abund.cpp: In function 'SEXPREC* abund(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
abund.cpp:411:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
411 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
abund.cpp:169:10: note: 'sigmaSqMuSamples_r' was declared here
169 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
abund.cpp:413:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
413 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
abund.cpp:170:10: note: 'betaStarSamples_r' was declared here
170 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c abundGaussian.cpp -o abundGaussian.o
abundGaussian.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
abundGaussian.cpp: In function 'SEXPREC* abundGaussian(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
abundGaussian.cpp:371:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
371 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
abundGaussian.cpp:164:10: note: 'sigmaSqMuSamples_r' was declared here
164 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
abundGaussian.cpp:373:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
373 | &REAL(betaStarSamples_r)[sPost*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
abundGaussian.cpp:165:10: note: 'betaStarSamples_r' was declared here
165 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c checkAlphaDS.cpp -o checkAlphaDS.o
checkAlphaDS.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c checkMSAlphaDS.cpp -o checkMSAlphaDS.o
checkMSAlphaDS.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c idist.cpp -o idist.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c init.cpp -o init.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c lfMsAbund.cpp -o lfMsAbund.o
lfMsAbund.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
lfMsAbund.cpp: In function 'SEXPREC* lfMsAbund(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
lfMsAbund.cpp:721:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
721 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:220:10: note: 'sigmaSqMuSamples_r' was declared here
220 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:722:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
722 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:221:10: note: 'betaStarSamples_r' was declared here
221 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsAbund.cpp:807:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
807 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:229:10: note: 'kappaSamples_r' was declared here
229 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c lfMsAbundGaussian.cpp -o lfMsAbundGaussian.o
lfMsAbundGaussian.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c lfMsDS.cpp -o lfMsDS.o
lfMsDS.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
lfMsAbundGaussian.cpp: In function 'SEXPREC* lfMsAbundGaussian(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
lfMsAbundGaussian.cpp:680:59: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
680 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsAbundGaussian.cpp:244:10: note: 'sigmaSqMuSamples_r' was declared here
244 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsAbundGaussian.cpp:681:59: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
681 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsAbundGaussian.cpp:245:10: note: 'betaStarSamples_r' was declared here
245 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsDS.cpp: In function 'SEXPREC* lfMsDS(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
lfMsDS.cpp:1153:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1153 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:278:10: note: 'sigmaSqPSamples_r' was declared here
278 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsDS.cpp:1154:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1154 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:279:10: note: 'alphaStarSamples_r' was declared here
279 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsDS.cpp:1157:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1157 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:287:10: note: 'sigmaSqMuSamples_r' was declared here
287 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsDS.cpp:1158:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1158 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:288:10: note: 'betaStarSamples_r' was declared here
288 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsDS.cpp:1260:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1260 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:295:10: note: 'kappaSamples_r' was declared here
295 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
lfMsDS.cpp:1256:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1256 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
lfMsDS.cpp:186:12: note: 'tmp_0' was declared here
186 | double tmp_0, tmp_02;
| ^~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c lfMsNMix.cpp -o lfMsNMix.o
lfMsNMix.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c mkSpCov.cpp -o mkSpCov.o
mkSpCov.cpp:3:9: warning: "R_NO_REMAP" redefined
3 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
lfMsNMix.cpp: In function 'SEXPREC* lfMsNMix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
lfMsNMix.cpp:1014:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1014 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:271:10: note: 'sigmaSqPSamples_r' was declared here
271 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1015:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1015 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:272:10: note: 'alphaStarSamples_r' was declared here
272 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1018:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1018 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:280:10: note: 'sigmaSqMuSamples_r' was declared here
280 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1019:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1019 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:281:10: note: 'betaStarSamples_r' was declared here
281 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1116:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1116 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:288:10: note: 'kappaSamples_r' was declared here
288 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
lfMsNMix.cpp:1112:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1112 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
lfMsNMix.cpp:179:12: note: 'tmp_0' was declared here
179 | double tmp_0, tmp_02;
| ^~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c msAbund.cpp -o msAbund.o
msAbund.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c msAbundGaussian.cpp -o msAbundGaussian.o
msAbundGaussian.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
msAbund.cpp: In function 'SEXPREC* msAbund(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
msAbund.cpp:527:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
527 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msAbund.cpp:200:10: note: 'sigmaSqMuSamples_r' was declared here
200 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msAbund.cpp:528:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
528 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msAbund.cpp:201:10: note: 'betaStarSamples_r' was declared here
201 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
msAbund.cpp:611:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
611 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
msAbund.cpp:209:10: note: 'kappaSamples_r' was declared here
209 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c msDS.cpp -o msDS.o
msDS.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
msAbundGaussian.cpp: In function 'SEXPREC* msAbundGaussian(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
msAbundGaussian.cpp:500:59: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
500 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msAbundGaussian.cpp:218:10: note: 'sigmaSqMuSamples_r' was declared here
218 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msAbundGaussian.cpp:501:59: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
501 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msAbundGaussian.cpp:219:10: note: 'betaStarSamples_r' was declared here
219 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c msNMix.cpp -o msNMix.o
msNMix.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
msDS.cpp: In function 'SEXPREC* msDS(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
msDS.cpp:967:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
967 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msDS.cpp:259:10: note: 'sigmaSqPSamples_r' was declared here
259 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
msDS.cpp:968:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
968 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msDS.cpp:260:10: note: 'alphaStarSamples_r' was declared here
260 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
msDS.cpp:971:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
971 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msDS.cpp:268:10: note: 'sigmaSqMuSamples_r' was declared here
268 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msDS.cpp:972:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
972 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msDS.cpp:269:10: note: 'betaStarSamples_r' was declared here
269 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
msDS.cpp:1072:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1072 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
msDS.cpp:276:10: note: 'kappaSamples_r' was declared here
276 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
msDS.cpp:1068:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1068 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
msDS.cpp:180:12: note: 'tmp_0' was declared here
180 | double tmp_0, tmp_02;
| ^~~~~
msNMix.cpp: In function 'SEXPREC* msNMix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
msNMix.cpp:840:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
840 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msNMix.cpp:253:10: note: 'sigmaSqPSamples_r' was declared here
253 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
msNMix.cpp:841:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
841 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msNMix.cpp:254:10: note: 'alphaStarSamples_r' was declared here
254 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
msNMix.cpp:844:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
844 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msNMix.cpp:262:10: note: 'sigmaSqMuSamples_r' was declared here
262 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msNMix.cpp:845:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
845 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msNMix.cpp:263:10: note: 'betaStarSamples_r' was declared here
263 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
msNMix.cpp:940:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
940 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
msNMix.cpp:270:10: note: 'kappaSamples_r' was declared here
270 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
msNMix.cpp:936:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
936 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
msNMix.cpp:174:12: note: 'tmp_0' was declared here
174 | double tmp_0, tmp_02;
| ^~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c nn.cpp -o nn.o
nn.cpp:11:9: warning: "R_NO_REMAP" redefined
11 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c rpg.cpp -o rpg.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c sfMsAbundGaussianNNGP.cpp -o sfMsAbundGaussianNNGP.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c sfMsAbundNNGP.cpp -o sfMsAbundNNGP.o
sfMsAbundGaussianNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
sfMsAbundNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
sfMsAbundGaussianNNGP.cpp: In function 'SEXPREC* sfMsAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
sfMsAbundGaussianNNGP.cpp:943:53: warning: 'yRepSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
943 | F77_NAME(dcopy)(&JN, yRep, &inc, &REAL(yRepSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:301:10: note: 'yRepSamples_r' was declared here
301 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:942:51: warning: 'muSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
942 | F77_NAME(dcopy)(&JN, mu, &inc, &REAL(muSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:302:10: note: 'muSamples_r' was declared here
302 | SEXP muSamples_r;
| ^~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:944:53: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
944 | F77_NAME(dcopy)(&JN, like, &inc, &REAL(likeSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:303:10: note: 'likeSamples_r' was declared here
303 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:949:59: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
949 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:320:10: note: 'sigmaSqMuSamples_r' was declared here
320 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:950:59: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
950 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:321:10: note: 'betaStarSamples_r' was declared here
321 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp: In function 'SEXPREC* sfMsAbundNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
sfMsAbundNNGP.cpp:539:21: warning: 'yRepSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
539 | SET_VECTOR_ELT(result_r, 3, yRepSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:269:10: note: 'yRepSamples_r' was declared here
269 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundNNGP.cpp:540:21: warning: 'muSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
540 | SET_VECTOR_ELT(result_r, 4, muSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:270:10: note: 'muSamples_r' was declared here
270 | SEXP muSamples_r;
| ^~~~~~~~~~~
sfMsAbundNNGP.cpp:541:21: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
541 | SET_VECTOR_ELT(result_r, 10, likeSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:271:10: note: 'likeSamples_r' was declared here
271 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundNNGP.cpp:549:21: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
549 | SET_VECTOR_ELT(result_r, 11, sigmaSqMuSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:288:10: note: 'sigmaSqMuSamples_r' was declared here
288 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:550:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
550 | SET_VECTOR_ELT(result_r, 12, betaStarSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:289:10: note: 'betaStarSamples_r' was declared here
289 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:558:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
558 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:297:10: note: 'kappaSamples_r' was declared here
297 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c sfMsAbundNNGPPredict.cpp -o sfMsAbundNNGPPredict.o
sfMsAbundNNGPPredict.cpp:9:9: warning: "R_NO_REMAP" redefined
9 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c sfMsDSNNGP.cpp -o sfMsDSNNGP.o
sfMsDSNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
sfMsDSNNGP.cpp: In function 'SEXPREC* sfMsDSNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
sfMsDSNNGP.cpp:1429:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1429 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:342:10: note: 'sigmaSqPSamples_r' was declared here
342 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1430:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1430 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:343:10: note: 'alphaStarSamples_r' was declared here
343 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1433:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1433 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:351:10: note: 'sigmaSqMuSamples_r' was declared here
351 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1434:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1434 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:352:10: note: 'betaStarSamples_r' was declared here
352 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1543:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1543 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:359:10: note: 'kappaSamples_r' was declared here
359 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1539:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1539 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
sfMsDSNNGP.cpp:244:12: note: 'tmp_0' was declared here
244 | double tmp_0, tmp_02;
| ^~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c sfMsNMixNNGP.cpp -o sfMsNMixNNGP.o
sfMsNMixNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
sfMsNMixNNGP.cpp: In function 'SEXPREC* sfMsNMixNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
sfMsNMixNNGP.cpp:1290:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1290 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:336:10: note: 'sigmaSqPSamples_r' was declared here
336 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1291:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1291 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:337:10: note: 'alphaStarSamples_r' was declared here
337 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1294:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1294 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:345:10: note: 'sigmaSqMuSamples_r' was declared here
345 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1295:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1295 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:346:10: note: 'betaStarSamples_r' was declared here
346 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1399:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1399 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:353:10: note: 'kappaSamples_r' was declared here
353 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1395:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1395 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
sfMsNMixNNGP.cpp:238:12: note: 'tmp_0' was declared here
238 | double tmp_0, tmp_02;
| ^~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c sfMsNMixNNGPPredict.cpp -o sfMsNMixNNGPPredict.o
sfMsNMixNNGPPredict.cpp:9:9: warning: "R_NO_REMAP" redefined
9 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c spAbundGaussianNNGP.cpp -o spAbundGaussianNNGP.o
spAbundGaussianNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
spAbundGaussianNNGP.cpp: In function 'SEXPREC* spAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spAbundGaussianNNGP.cpp:663:52: warning: 'yRepSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
663 | F77_NAME(dcopy)(&J, yRep, &inc, &REAL(yRepSamples_r)[sPost*J], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:230:10: note: 'yRepSamples_r' was declared here
230 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:664:60: warning: 'yRepZeroSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
664 | F77_NAME(dcopy)(&JZero, yRepZero, &inc, &REAL(yRepZeroSamples_r)[sPost*JZero], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:231:10: note: 'yRepZeroSamples_r' was declared here
231 | SEXP yRepZeroSamples_r;
| ^~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:665:50: warning: 'muSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
665 | F77_NAME(dcopy)(&J, mu, &inc, &REAL(muSamples_r)[sPost*J], &inc);
| ~~~~^~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:232:10: note: 'muSamples_r' was declared here
232 | SEXP muSamples_r;
| ^~~~~~~~~~~
spAbundGaussianNNGP.cpp:667:36: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
667 | &REAL(likeSamples_r)[sPost*J], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:233:10: note: 'likeSamples_r' was declared here
233 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:671:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
671 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:248:10: note: 'sigmaSqMuSamples_r' was declared here
248 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:673:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
673 | &REAL(betaStarSamples_r)[sPost*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:249:10: note: 'betaStarSamples_r' was declared here
249 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c spAbundNNGP.cpp -o spAbundNNGP.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c spDSNNGP.cpp -o spDSNNGP.o
spAbundNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
spDSNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c spNMixNNGP.cpp -o spNMixNNGP.o
spNMixNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
spAbundNNGP.cpp: In function 'SEXPREC* spAbundNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spAbundNNGP.cpp:760:55: warning: 'yRepSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
760 | F77_NAME(dcopy)(&nObs, yRep, &inc, &REAL(yRepSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundNNGP.cpp:223:10: note: 'yRepSamples_r' was declared here
223 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
spAbundNNGP.cpp:759:53: warning: 'muSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
759 | F77_NAME(dcopy)(&nObs, mu, &inc, &REAL(muSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~
spAbundNNGP.cpp:224:10: note: 'muSamples_r' was declared here
224 | SEXP muSamples_r;
| ^~~~~~~~~~~
spAbundNNGP.cpp:762:36: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
762 | &REAL(likeSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundNNGP.cpp:225:10: note: 'likeSamples_r' was declared here
225 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
spAbundNNGP.cpp:861:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
861 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:237:10: note: 'kappaSamples_r' was declared here
237 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
spAbundNNGP.cpp:771:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
771 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:243:10: note: 'sigmaSqMuSamples_r' was declared here
243 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:773:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
773 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:244:10: note: 'betaStarSamples_r' was declared here
244 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spNMixNNGP.cpp: In function 'SEXPREC* spNMixNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spNMixNNGP.cpp:1076:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1076 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:259:10: note: 'kappaSamples_r' was declared here
259 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
spNMixNNGP.cpp:976:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
976 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:271:10: note: 'sigmaSqPSamples_r' was declared here
271 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:978:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
978 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:272:10: note: 'alphaStarSamples_r' was declared here
272 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:970:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
970 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:280:10: note: 'sigmaSqMuSamples_r' was declared here
280 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:972:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
972 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:281:10: note: 'betaStarSamples_r' was declared here
281 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:1072:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1072 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
spNMixNNGP.cpp:292:12: note: 'tmp_0' was declared here
292 | double tmp_0, tmp_02;
| ^~~~~
spDSNNGP.cpp: In function 'SEXPREC* spDSNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spDSNNGP.cpp:1235:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1235 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:261:10: note: 'kappaSamples_r' was declared here
261 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
spDSNNGP.cpp:1128:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1128 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:273:10: note: 'sigmaSqPSamples_r' was declared here
273 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1130:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1130 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:274:10: note: 'alphaStarSamples_r' was declared here
274 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1122:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1122 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:282:10: note: 'sigmaSqMuSamples_r' was declared here
282 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1124:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1124 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:283:10: note: 'betaStarSamples_r' was declared here
283 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1231:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1231 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
spDSNNGP.cpp:305:12: note: 'tmp_0' was declared here
305 | double tmp_0, tmp_02;
| ^~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c spNMixNNGPPredict.cpp -o spNMixNNGPPredict.o
spNMixNNGPPredict.cpp:9:9: warning: "R_NO_REMAP" redefined
9 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c svcAbundGaussianNNGP.cpp -o svcAbundGaussianNNGP.o
svcAbundGaussianNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
svcAbundGaussianNNGP.cpp: In function 'SEXPREC* svcAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcAbundGaussianNNGP.cpp:712:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
712 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcAbundGaussianNNGP.cpp:244:10: note: 'sigmaSqMuSamples_r' was declared here
244 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcAbundGaussianNNGP.cpp:714:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
714 | &REAL(betaStarSamples_r)[sPost*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcAbundGaussianNNGP.cpp:245:10: note: 'betaStarSamples_r' was declared here
245 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
svcAbundGaussianNNGP.cpp:581:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized]
581 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet)
| ^~~
svcAbundGaussianNNGP.cpp:331:12: note: 'logDet' was declared here
331 | double logDet;
| ^~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c svcAbundGaussianNNGPPredict.cpp -o svcAbundGaussianNNGPPredict.o
svcAbundGaussianNNGPPredict.cpp:9:9: warning: "R_NO_REMAP" redefined
9 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c svcAbundNNGP.cpp -o svcAbundNNGP.o
svcAbundNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c svcAbundNNGPPredict.cpp -o svcAbundNNGPPredict.o
svcAbundNNGPPredict.cpp:9:9: warning: "R_NO_REMAP" redefined
9 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
svcAbundNNGP.cpp: In function 'SEXPREC* svcAbundNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcAbundNNGP.cpp:796:55: warning: 'yRepSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
796 | F77_NAME(dcopy)(&nObs, yRep, &inc, &REAL(yRepSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~~~
svcAbundNNGP.cpp:226:10: note: 'yRepSamples_r' was declared here
226 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
svcAbundNNGP.cpp:795:53: warning: 'muSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
795 | F77_NAME(dcopy)(&nObs, mu, &inc, &REAL(muSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~
svcAbundNNGP.cpp:227:10: note: 'muSamples_r' was declared here
227 | SEXP muSamples_r;
| ^~~~~~~~~~~
svcAbundNNGP.cpp:798:36: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
798 | &REAL(likeSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~~~
svcAbundNNGP.cpp:228:10: note: 'likeSamples_r' was declared here
228 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
svcAbundNNGP.cpp:896:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
896 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:240:10: note: 'kappaSamples_r' was declared here
240 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
svcAbundNNGP.cpp:807:36: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
807 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:246:10: note: 'sigmaSqMuSamples_r' was declared here
246 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:809:36: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
809 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:247:10: note: 'betaStarSamples_r' was declared here
247 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c svcMsAbundGaussianNNGP.cpp -o svcMsAbundGaussianNNGP.o
svcMsAbundGaussianNNGP.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
svcMsAbundGaussianNNGP.cpp: In function 'SEXPREC* svcMsAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcMsAbundGaussianNNGP.cpp:1031:59: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1031 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcMsAbundGaussianNNGP.cpp:321:10: note: 'sigmaSqMuSamples_r' was declared here
321 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcMsAbundGaussianNNGP.cpp:1032:59: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1032 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcMsAbundGaussianNNGP.cpp:322:10: note: 'betaStarSamples_r' was declared here
322 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c svcMsAbundGaussianNNGPPredict.cpp -o svcMsAbundGaussianNNGPPredict.o
svcMsAbundGaussianNNGPPredict.cpp:9:9: warning: "R_NO_REMAP" redefined
9 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c util.cpp -o util.o
util.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c waicAbund.cpp -o waicAbund.o
waicAbund.cpp:10:9: warning: "R_NO_REMAP" redefined
10 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o spAbundance.so DS.o NMix.o abund.o abundGaussian.o checkAlphaDS.o checkMSAlphaDS.o idist.o init.o lfMsAbund.o lfMsAbundGaussian.o lfMsDS.o lfMsNMix.o mkSpCov.o msAbund.o msAbundGaussian.o msDS.o msNMix.o nn.o rpg.o sfMsAbundGaussianNNGP.o sfMsAbundNNGP.o sfMsAbundNNGPPredict.o sfMsDSNNGP.o sfMsNMixNNGP.o sfMsNMixNNGPPredict.o spAbundGaussianNNGP.o spAbundNNGP.o spDSNNGP.o spNMixNNGP.o spNMixNNGPPredict.o svcAbundGaussianNNGP.o svcAbundGaussianNNGPPredict.o svcAbundNNGP.o svcAbundNNGPPredict.o svcMsAbundGaussianNNGP.o svcMsAbundGaussianNNGPPredict.o util.o waicAbund.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/spAbundance/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/spAbundance/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/spAbundance/src'
installing to /data/gannet/ripley/R/packages/tests-devel/spAbundance.Rcheck/00LOCK-spAbundance/00new/spAbundance/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (spAbundance)