• using R Under development (unstable) (2025-03-13 r87951)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)     GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
• running under: Fedora Linux 40 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘smooth/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘smooth’ version ‘4.1.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘smooth’ can be installed ... [6m/12m] OK See the install log for details.
• used C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
• used C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [4s/10s] OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... [4s/10s] OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... [4s/10s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [180s/427s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [42s/101s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [34s/72s] OK   Running ‘testthat.R’ [34s/71s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [5m/11m] ERROR Error(s) in re-building vignettes: --- re-building ‘adam.Rmd’ using rmarkdown ** Processing: Figs/ETSMMM-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29252 bytes Input file size = 29366 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23853   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23853 Output IDAT size = 23853 bytes (5399 bytes decrease) Output file size = 23931 bytes (5435 bytes = 18.51% decrease) ** Processing: Figs/ETSMMMForecast-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32300 bytes Input file size = 32414 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26136   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26136 Output IDAT size = 26136 bytes (6164 bytes decrease) Output file size = 26214 bytes (6200 bytes = 19.13% decrease) ** Processing: Figs/ETSMMMPlots-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51188 bytes Input file size = 51338 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37314   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37314 Output IDAT size = 37314 bytes (13874 bytes decrease) Output file size = 37392 bytes (13946 bytes = 27.17% decrease) ** Processing: Figs/ETSMMMPlots-2.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 18483 bytes Input file size = 19365 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17234   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17234 Output IDAT size = 17234 bytes (1249 bytes decrease) Output file size = 17312 bytes (2053 bytes = 10.60% decrease) ** Processing: Figs/ETSLoss-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19149 bytes Input file size = 19251 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15174   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15174 Output IDAT size = 15174 bytes (3975 bytes decrease) Output file size = 15252 bytes (3999 bytes = 20.77% decrease) ** Processing: Figs/ETSDGNorm-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19174 bytes Input file size = 19276 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15269   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15269 Output IDAT size = 15269 bytes (3905 bytes decrease) Output file size = 15347 bytes (3929 bytes = 20.38% decrease) ** Processing: Figs/ETSSelection-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24541 bytes Input file size = 24643 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20884   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20884 Output IDAT size = 20884 bytes (3657 bytes decrease) Output file size = 20962 bytes (3681 bytes = 14.94% decrease) ** Processing: Figs/ETSCombination-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33658 bytes Input file size = 33784 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27312   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27312 Output IDAT size = 27312 bytes (6346 bytes decrease) Output file size = 27390 bytes (6394 bytes = 18.93% decrease) ** Processing: Figs/ETSMultiFreq-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 87229 bytes Input file size = 87427 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 83734   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 83734 Output IDAT size = 83734 bytes (3495 bytes decrease) Output file size = 83812 bytes (3615 bytes = 4.13% decrease) ** Processing: Figs/ETSMultiFreq10000-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 87692 bytes Input file size = 87890 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 84168   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 84168 Output IDAT size = 84168 bytes (3524 bytes decrease) Output file size = 84246 bytes (3644 bytes = 4.15% decrease) ** Processing: Figs/ETSMultiFreqBReused-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 87756 bytes Input file size = 87954 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 84133   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 84133 Output IDAT size = 84133 bytes (3623 bytes decrease) Output file size = 84211 bytes (3743 bytes = 4.26% decrease) Quitting from lines 220-223 [ETSMultiFreqOccurrence] (adam.Rmd) Error: processing vignette 'adam.Rmd' failed with diagnostics: REAL() can only be applied to a 'numeric', not a 'logical' --- failed re-building ‘adam.Rmd’ --- re-building ‘ces.Rmd’ using rmarkdown ** Processing: Figs/ces_N2457-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25200 bytes Input file size = 25314 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19765   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19765 Output IDAT size = 19765 bytes (5435 bytes decrease) Output file size = 19843 bytes (5471 bytes = 21.61% decrease) ** Processing: Figs/auto_ces_N2457-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27499 bytes Input file size = 27613 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21023   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21023 Output IDAT size = 21023 bytes (6476 bytes decrease) Output file size = 21101 bytes (6512 bytes = 23.58% decrease) --- finished re-building ‘ces.Rmd’ --- re-building ‘es.Rmd’ using rmarkdown ** Processing: Figs/es_N2457-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19598 bytes Input file size = 19700 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15553   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15553 Output IDAT size = 15553 bytes (4045 bytes decrease) Output file size = 15631 bytes (4069 bytes = 20.65% decrease) ** Processing: Figs/es_N2457_with_interval-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23916 bytes Input file size = 24018 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18622   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18622 Output IDAT size = 18622 bytes (5294 bytes decrease) Output file size = 18700 bytes (5318 bytes = 22.14% decrease) --- finished re-building ‘es.Rmd’ --- re-building ‘gum.Rmd’ using rmarkdown ** Processing: Figs/Autogum_N2457_1[1]-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 36244 bytes Input file size = 36370 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29699   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29699 Output IDAT size = 29699 bytes (6545 bytes decrease) Output file size = 29777 bytes (6593 bytes = 18.13% decrease) --- finished re-building ‘gum.Rmd’ --- re-building ‘oes.Rmd’ using rmarkdown ** Processing: Figs/iETSFExample1-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19745 bytes Input file size = 19847 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 17505   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 17505 Output IDAT size = 17505 bytes (2240 bytes decrease) Output file size = 17583 bytes (2264 bytes = 11.41% decrease) ** Processing: Figs/iETSFExample2-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24431 bytes Input file size = 24533 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 22016   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 22016 Output IDAT size = 22016 bytes (2415 bytes decrease) Output file size = 22094 bytes (2439 bytes = 9.94% decrease) ** Processing: Figs/iETSOExample1-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23132 bytes Input file size = 23234 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 20798   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 20798 Output IDAT size = 20798 bytes (2334 bytes decrease) Output file size = 20876 bytes (2358 bytes = 10.15% decrease) Quitting from lines 170-171 [iETSOExample2] (oes.Rmd) Error: processing vignette 'oes.Rmd' failed with diagnostics: REAL() can only be applied to a 'numeric', not a 'logical' --- failed re-building ‘oes.Rmd’ --- re-building ‘simulate.Rmd’ using rmarkdown ** Processing: Figs/sim_es_ANN_plot_data-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 17538 bytes Input file size = 18420 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16161   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 14279   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 14238   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 14238 Output IDAT size = 14238 bytes (3300 bytes decrease) Output file size = 14316 bytes (4104 bytes = 22.28% decrease) ** Processing: Figs/sim_es_ANN_plot-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 17513 bytes Input file size = 18395 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16107   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 16085   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 13811   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 13754   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 13754 Output IDAT size = 13754 bytes (3759 bytes decrease) Output file size = 13832 bytes (4563 bytes = 24.81% decrease) ** Processing: Figs/sim_es_MAdM-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 12427 bytes Input file size = 13297 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11522   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 11350   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 10467   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 10430   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 10430 Output IDAT size = 10430 bytes (1997 bytes decrease) Output file size = 10508 bytes (2789 bytes = 20.97% decrease) ** Processing: Figs/sim_es_MAdM_lnorm-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 23091 bytes Input file size = 23973 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21558   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 16091   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 16075   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 16075 Output IDAT size = 16075 bytes (7016 bytes decrease) Output file size = 16153 bytes (7820 bytes = 32.62% decrease) ** Processing: Figs/sim_es_iMNN-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 14484 bytes Input file size = 15354 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13332   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 13329   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8857   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 8804   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 8804 Output IDAT size = 8804 bytes (5680 bytes decrease) Output file size = 8882 bytes (6472 bytes = 42.15% decrease) ** Processing: Figs/simulate_smooth_es_compare-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 23997 bytes Input file size = 24879 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22323   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 22208   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 17118   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 17030   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 17030 Output IDAT size = 17030 bytes (6967 bytes decrease) Output file size = 17108 bytes (7771 bytes = 31.24% decrease) ** Processing: Figs/sim_ssarima_(0,1,1)_plot-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8656 bytes Input file size = 9526 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7642   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7622   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7622 Output IDAT size = 7622 bytes (1034 bytes decrease) Output file size = 7700 bytes (1826 bytes = 19.17% decrease) ** Processing: Figs/sim_ssarima_(0,1,1)(1,0,2)_12_drift-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7760 bytes Input file size = 8618 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6937   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6887   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6887 Output IDAT size = 6887 bytes (873 bytes decrease) Output file size = 6965 bytes (1653 bytes = 19.18% decrease) ** Processing: Figs/sim_ssarima_(1,0,2)_1(0,1,1)_7(1,0,1)_30-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 48147 bytes Input file size = 49065 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47088   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 46895   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 23910   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 23797   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 23797 Output IDAT size = 23797 bytes (24350 bytes decrease) Output file size = 23875 bytes (25190 bytes = 51.34% decrease) ** Processing: Figs/sim_ssarima_(1,0,2)_1(0,1,1)_7intermittent-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 14847 bytes Input file size = 15717 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13715   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 10583   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 10529   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 10529 Output IDAT size = 10529 bytes (4318 bytes decrease) Output file size = 10607 bytes (5110 bytes = 32.51% decrease) ** Processing: Figs/simulate_smooth_ssarima_compare-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 18146 bytes Input file size = 19028 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16679   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 16367   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 15706   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 15551   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 15551 Output IDAT size = 15551 bytes (2595 bytes decrease) Output file size = 15629 bytes (3399 bytes = 17.86% decrease) ** Processing: Figs/sim_ces_(n)_plot-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6230 bytes Input file size = 7088 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5312   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5312 Output IDAT size = 5312 bytes (918 bytes decrease) Output file size = 5390 bytes (1698 bytes = 23.96% decrease) ** Processing: Figs/sim_ces_(s)-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 32797 bytes Input file size = 33703 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30922   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 19144   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 19132   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 19132 Output IDAT size = 19132 bytes (13665 bytes decrease) Output file size = 19210 bytes (14493 bytes = 43.00% decrease) ** Processing: Figs/sim_ces_(s)_messing_arround-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 20128 bytes Input file size = 21010 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18708   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 18677   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 13884   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 13850   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 13850 Output IDAT size = 13850 bytes (6278 bytes decrease) Output file size = 13928 bytes (7082 bytes = 33.71% decrease) ** Processing: Figs/sim_ces_(p)-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6537 bytes Input file size = 7395 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5707   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5633   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5633 Output IDAT size = 5633 bytes (904 bytes decrease) Output file size = 5711 bytes (1684 bytes = 22.77% decrease) ** Processing: Figs/sim_ces_(f)-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 29214 bytes Input file size = 30108 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28201   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 27670   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 18612   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 18612 Output IDAT size = 18612 bytes (10602 bytes decrease) Output file size = 18690 bytes (11418 bytes = 37.92% decrease) ** Processing: Figs/simulate_smooth_ces_compare-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 25948 bytes Input file size = 26842 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24618   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 24573   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 17296   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 17274   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 17274 Output IDAT size = 17274 bytes (8674 bytes decrease) Output file size = 17352 bytes (9490 bytes = 35.36% decrease) ** Processing: Figs/simulate_smooth_gum_compare-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 23134 bytes Input file size = 24016 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21752   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 16772   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 16708   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 16708 Output IDAT size = 16708 bytes (6426 bytes decrease) Output file size = 16786 bytes (7230 bytes = 30.10% decrease) ** Processing: Figs/sim_sma_(10)-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 19956 bytes Input file size = 20838 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18763   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 18684   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 15066   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 14990   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 14990 Output IDAT size = 14990 bytes (4966 bytes decrease) Output file size = 15068 bytes (5770 bytes = 27.69% decrease) ** Processing: Figs/simulate_smooth_sma-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 41345 bytes Input file size = 42263 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41168   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 39011   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 24501   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 23887   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 23887 Output IDAT size = 23887 bytes (17458 bytes decrease) Output file size = 23965 bytes (18298 bytes = 43.30% decrease) --- finished re-building ‘simulate.Rmd’ --- re-building ‘sma.Rmd’ using rmarkdown ** Processing: Figs/sma_N2457-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25651 bytes Input file size = 25765 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23222   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 22048   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 22048 Output IDAT size = 22048 bytes (3603 bytes decrease) Output file size = 22126 bytes (3639 bytes = 14.12% decrease) --- finished re-building ‘sma.Rmd’ --- re-building ‘smooth.Rmd’ using rmarkdown --- finished re-building ‘smooth.Rmd’ --- re-building ‘ssarima.Rmd’ using rmarkdown ** Processing: Figs/ssarima_N2457-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 36477 bytes Input file size = 36603 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30306   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30306 Output IDAT size = 30306 bytes (6171 bytes decrease) Output file size = 30384 bytes (6219 bytes = 16.99% decrease) ** Processing: Figs/mssarima_N2457_orders_multiple_seasonalities-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28062 bytes Input file size = 28176 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23803   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23803 Output IDAT size = 23803 bytes (4259 bytes decrease) Output file size = 23881 bytes (4295 bytes = 15.24% decrease) --- finished re-building ‘ssarima.Rmd’ SUMMARY: processing the following files failed:   ‘adam.Rmd’ ‘oes.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [16s/35s] OK
• checking HTML version of manual ... [10s/20s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR