* installing *source* package ‘seqtrie’ ...
** this is package ‘seqtrie’ version ‘0.3.5’
** package ‘seqtrie’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/seqtrie/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DSEQTRIE_SMALL_ARRAY_SIZE=32 -I. -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c CharCounter.cpp -o CharCounter.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DSEQTRIE_SMALL_ARRAY_SIZE=32 -I. -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RadixForest.cpp -o RadixForest.o
In file included from CharCounter.cpp:1:
seqtrie_types.h: In function ‘CostMap convert_cost_matrix(Rcpp::IntegerMatrix, int, int)’:
seqtrie_types.h:193:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  193 |   for(size_t i = 0; i < rownames.size(); ++i) {
      |                     ~~^~~~~~~~~~~~~~~~~
seqtrie_types.h:204:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  204 |   for(size_t i = 0; i < rownames.size(); ++i) {
      |                     ~~^~~~~~~~~~~~~~~~~
In file included from RadixForest.cpp:1:
seqtrie_types.h: In function ‘CostMap convert_cost_matrix(Rcpp::IntegerMatrix, int, int)’:
seqtrie_types.h:193:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  193 |   for(size_t i = 0; i < rownames.size(); ++i) {
      |                     ~~^~~~~~~~~~~~~~~~~
seqtrie_types.h:204:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  204 |   for(size_t i = 0; i < rownames.size(); ++i) {
      |                     ~~^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DSEQTRIE_SMALL_ARRAY_SIZE=32 -I. -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RadixTree.cpp -o RadixTree.o
In file included from RadixTree.cpp:1:
seqtrie_types.h: In function ‘CostMap convert_cost_matrix(Rcpp::IntegerMatrix, int, int)’:
seqtrie_types.h:193:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  193 |   for(size_t i = 0; i < rownames.size(); ++i) {
      |                     ~~^~~~~~~~~~~~~~~~~
seqtrie_types.h:204:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  204 |   for(size_t i = 0; i < rownames.size(); ++i) {
      |                     ~~^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DSEQTRIE_SMALL_ARRAY_SIZE=32 -I. -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
seqtrie_types.h: In function ‘CostMap convert_cost_matrix(Rcpp::IntegerMatrix, int, int)’:
seqtrie_types.h:193:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  193 |   for(size_t i = 0; i < rownames.size(); ++i) {
      |                     ~~^~~~~~~~~~~~~~~~~
seqtrie_types.h:204:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  204 |   for(size_t i = 0; i < rownames.size(); ++i) {
      |                     ~~^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DSEQTRIE_SMALL_ARRAY_SIZE=32 -I. -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c pairwise.cpp -o pairwise.o
In file included from pairwise.cpp:1:
seqtrie_types.h: In function ‘CostMap convert_cost_matrix(Rcpp::IntegerMatrix, int, int)’:
seqtrie_types.h:193:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  193 |   for(size_t i = 0; i < rownames.size(); ++i) {
      |                     ~~^~~~~~~~~~~~~~~~~
seqtrie_types.h:204:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  204 |   for(size_t i = 0; i < rownames.size(); ++i) {
      |                     ~~^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o seqtrie.so CharCounter.o RadixForest.o RadixTree.o RcppExports.o pairwise.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/seqtrie/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/seqtrie/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/seqtrie/src'
installing to /data/gannet/ripley/R/packages/tests-devel/seqtrie.Rcheck/00LOCK-seqtrie/00new/seqtrie/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (seqtrie)