* installing *source* package ‘secsse’ ...
** package ‘secsse’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (GCC) 14.2.0’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/secsse/src'
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c secsse_eval.cpp -o secsse_eval.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c secsse_loglik.cpp -o secsse_loglik.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c secsse_sim.cpp -o secsse_sim.o
In file included from secsse_sim.cpp:10:
secsse_sim2.h: In member function 'void secsse_sim::run()':
secsse_sim2.h:273:47: warning: comparison of integer expressions of different signedness: 'std::array<int, 2>::value_type' {aka 'int'} and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare]
273 | if (track_crowns[0] + track_crowns[1] >= max_spec) {
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/traits.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/storage.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/vector.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:23,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint.hpp:25,
from odeint.h:12,
from secsse_loglik.h:13,
from secsse_eval.cpp:13:
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
111 | public std::iterator<IC, T> {
| ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.2.0/bits/stl_algobase.h:65,
from /usr/local/gcc14/include/c++/14.2.0/vector:62,
from secsse_eval.cpp:9:
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
149 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/traits.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/storage.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/vector.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:23,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint.hpp:25,
from odeint.h:12,
from secsse_loglik.h:13,
from secsse_loglik.cpp:14:
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
111 | public std::iterator<IC, T> {
| ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.2.0/bits/stl_algobase.h:65,
from /usr/local/gcc14/include/c++/14.2.0/vector:62,
from secsse_loglik.cpp:9:
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
149 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /data/gannet/ripley/R/test-dev/RcppParallel/include/tbb/tbb.h:32,
from /data/gannet/ripley/R/test-dev/RcppParallel/include/RcppParallel/TBB.h:10,
from /data/gannet/ripley/R/test-dev/RcppParallel/include/RcppParallel.h:24,
from secsse_loglik.cpp:13:
/data/gannet/ripley/R/test-dev/RcppParallel/include/tbb/atomic.h: In instantiation of 'tbb::atomic<T>& tbb::internal::as_atomic(T&) [with T = long unsigned int]':
/data/gannet/ripley/R/test-dev/RcppParallel/include/tbb/tbb_thread.h:251:29: required from here
251 | return as_atomic(location.my_id).compare_and_swap(value.my_id, comparand.my_id);
| ~~~~~~~~~^~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/RcppParallel/include/tbb/atomic.h:544:12: warning: casting 'long unsigned int' to 'tbb::atomic<long unsigned int>&' does not use 'constexpr tbb::atomic<long unsigned int>::atomic(long unsigned int)' [-Wcast-user-defined]
544 | return (atomic<T>&)t;
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/RcppParallel/include/tbb/atomic.h: In instantiation of 'tbb::atomic<T>& tbb::internal::as_atomic(T&) [with T = tbb::interface5::internal::hash_map_base::bucket*]':
/data/gannet/ripley/R/test-dev/RcppParallel/include/tbb/concurrent_hash_map.h:291:31: required from here
291 | && as_atomic(my_table[new_seg]).compare_and_swap(is_allocating, NULL) == NULL )
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/RcppParallel/include/tbb/atomic.h:544:12: warning: casting 'tbb::interface5::internal::hash_map_base::bucket*' to 'tbb::atomic<tbb::interface5::internal::hash_map_base::bucket*>&' does not use 'constexpr tbb::atomic<T*>::atomic(T*) [with T = tbb::interface5::internal::hash_map_base::bucket]' [-Wcast-user-defined]
544 | return (atomic<T>&)t;
| ^~~~~~~~~~~~~
In file included from /data/gannet/ripley/R/test-dev/RcppParallel/include/tbb/tbb.h:32,
from /data/gannet/ripley/R/test-dev/RcppParallel/include/RcppParallel/TBB.h:10,
from /data/gannet/ripley/R/test-dev/RcppParallel/include/RcppParallel.h:24,
from secsse_eval.cpp:12:
/data/gannet/ripley/R/test-dev/RcppParallel/include/tbb/atomic.h: In instantiation of 'tbb::atomic<T>& tbb::internal::as_atomic(T&) [with T = long unsigned int]':
/data/gannet/ripley/R/test-dev/RcppParallel/include/tbb/tbb_thread.h:251:29: required from here
251 | return as_atomic(location.my_id).compare_and_swap(value.my_id, comparand.my_id);
| ~~~~~~~~~^~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/RcppParallel/include/tbb/atomic.h:544:12: warning: casting 'long unsigned int' to 'tbb::atomic<long unsigned int>&' does not use 'constexpr tbb::atomic<long unsigned int>::atomic(long unsigned int)' [-Wcast-user-defined]
544 | return (atomic<T>&)t;
| ^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/RcppParallel/include/tbb/atomic.h: In instantiation of 'tbb::atomic<T>& tbb::internal::as_atomic(T&) [with T = tbb::interface5::internal::hash_map_base::bucket*]':
/data/gannet/ripley/R/test-dev/RcppParallel/include/tbb/concurrent_hash_map.h:291:31: required from here
291 | && as_atomic(my_table[new_seg]).compare_and_swap(is_allocating, NULL) == NULL )
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/RcppParallel/include/tbb/atomic.h:544:12: warning: casting 'tbb::interface5::internal::hash_map_base::bucket*' to 'tbb::atomic<tbb::interface5::internal::hash_map_base::bucket*>&' does not use 'constexpr tbb::atomic<T*>::atomic(T*) [with T = tbb::interface5::internal::hash_map_base::bucket]' [-Wcast-user-defined]
544 | return (atomic<T>&)t;
| ^~~~~~~~~~~~~
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/concept/assert.hpp:35,
from /data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:20,
from /data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:19,
from /data/gannet/ripley/R/test-dev/BH/include/boost/range/size_type.hpp:20,
from /data/gannet/ripley/R/test-dev/BH/include/boost/range/size.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/range/functions.hpp:20,
from /data/gannet/ripley/R/test-dev/BH/include/boost/range.hpp:18,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/resize.hpp:22,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/state_wrapper.hpp:26,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:33:
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::CopyConstructible<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:167:5: required from 'struct boost::CopyConstructible<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:125:16: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
125 | struct IncrementableIteratorConcept : CopyConstructible<Iterator>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:31:
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag> >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:208:5: required from 'struct boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag> >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag> >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_<void (*)(boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>)>'
72 | struct requirement_<void(*)(Model)>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/iterator/iterator_concepts.hpp:114:7: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>]':
/data/gannet/ripley/R/test-dev/BH/include/boost/iterator/iterator_concepts.hpp:114:7: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::Convertible<X, Y>::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::incrementable_traversal_tag]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
208 | BOOST_CONCEPT_USAGE(Convertible) {
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:136:13: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::EqualityComparable<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:233:5: required from 'struct boost::EqualityComparable<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag> >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:208:5: required from 'struct boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag> >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag> >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_<void (*)(boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>)>'
72 | struct requirement_<void(*)(Model)>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:152:13: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>]':
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:152:13: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_<void (*)(boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >)>'
72 | struct requirement_<void(*)(Model)>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:278:9: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::Convertible<X, Y>::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::single_pass_traversal_tag]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
208 | BOOST_CONCEPT_USAGE(Convertible) {
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:158:13: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_<void (*)(boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >)>'
72 | struct requirement_<void(*)(Model)>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:278:9: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:278:9: required from 'struct boost::SinglePassRangeConcept<std::vector<double> >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::SinglePassRangeConcept<std::vector<double> >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::SinglePassRangeConcept<std::vector<double> > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::SinglePassRangeConcept<std::vector<double> > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_<void (*)(boost::SinglePassRangeConcept<std::vector<double> >)>'
72 | struct requirement_<void(*)(Model)>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/size.hpp:62:9: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::SinglePassIteratorConcept<Iterator>::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept)
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::CopyConstructible<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:167:5: required from 'struct boost::CopyConstructible<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:125:16: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
125 | struct IncrementableIteratorConcept : CopyConstructible<Iterator>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:136:13: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::EqualityComparable<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:233:5: required from 'struct boost::EqualityComparable<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:158:13: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_<void (*)(boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >)>'
72 | struct requirement_<void(*)(Model)>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:281:9: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:281:9: required from 'struct boost::SinglePassRangeConcept<std::vector<double> >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::SinglePassRangeConcept<std::vector<double> >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::SinglePassRangeConcept<std::vector<double> > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::SinglePassRangeConcept<std::vector<double> > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_<void (*)(boost::SinglePassRangeConcept<std::vector<double> >)>'
72 | struct requirement_<void(*)(Model)>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/size.hpp:62:9: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::SinglePassIteratorConcept<Iterator>::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept)
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::SinglePassRangeConcept<std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:284:9: required from 'struct boost::SinglePassRangeConcept<std::vector<double> >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::SinglePassRangeConcept<std::vector<double> >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::SinglePassRangeConcept<std::vector<double> > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::SinglePassRangeConcept<std::vector<double> > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_<void (*)(boost::SinglePassRangeConcept<std::vector<double> >)>'
72 | struct requirement_<void(*)(Model)>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/size.hpp:62:9: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::SinglePassRangeConcept<std::vector<double> >]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::SinglePassRangeConcept<std::vector<double> >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/range/size.hpp:62:9: required from 'typename boost::range_size<const SinglePassRange>::type boost::size(const SinglePassRange&) [with SinglePassRange = std::vector<double>; typename range_size<const SinglePassRange>::type = long unsigned int]'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/same_size.hpp:43:29: required from 'static bool boost::numeric::odeint::same_size_impl_sfinae<State1, State2, Enabler>::same_size(const State1&, const State2&) [with State1 = std::vector<double>; State2 = std::vector<double>; Enabler = void]'
43 | return ( boost::size( x1 ) == boost::size( x2 ) );
| ~~~~~~~~~~~^~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/same_size.hpp:55:67: required from 'static bool boost::numeric::odeint::same_size_impl<State1, State2>::same_size(const State1&, const State2&) [with State1 = std::vector<double>; State2 = std::vector<double>]'
55 | return same_size_impl_sfinae< State1 , State2 >::same_size( x1 , x2 );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/same_size.hpp:64:56: required from 'bool boost::numeric::odeint::same_size(const State1&, const State2&) [with State1 = std::vector<double>; State2 = std::vector<double>]'
64 | return same_size_impl< State1 , State2 >::same_size( x1 , x2 );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/resizer.hpp:33:20: required from 'bool boost::numeric::odeint::adjust_size_by_resizeability(ResizeWrappedState&, const State&, boost::true_type) [with ResizeWrappedState = state_wrapper<std::vector<double>, void>; State = std::vector<double>; boost::true_type = boost::integral_constant<bool, true>]'
33 | if ( !same_size( x.m_v , y ) )
| ~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/stepper/controlled_runge_kutta.hpp:495:44: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::SinglePassRangeConcept<T>::~SinglePassRangeConcept() [with T = std::vector<double>]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept)
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::SinglePassRangeConcept<const std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:284:9: required from 'struct boost::SinglePassRangeConcept<const std::vector<double> >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::SinglePassRangeConcept<const std::vector<double> >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::SinglePassRangeConcept<const std::vector<double> > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::SinglePassRangeConcept<const std::vector<double> > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_<void (*)(boost::SinglePassRangeConcept<const std::vector<double> >)>'
72 | struct requirement_<void(*)(Model)>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/algorithm/equal.hpp:174:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::SinglePassRangeConcept<const std::vector<double> >]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::SinglePassRangeConcept<const std::vector<double> >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/range/algorithm/equal.hpp:174:13: required from 'OutputIterator boost::range::copy(const SinglePassRange&, OutputIterator) [with SinglePassRange = std::vector<double>; OutputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/copy.hpp:37:27: required from 'void boost::numeric::odeint::detail::do_copying(const Container1&, Container2&, mpl_::true_) [with Container1 = std::vector<double>; Container2 = std::vector<double>; mpl_::true_ = mpl_::bool_<true>]'
37 | boost::range::copy( from , boost::begin( to ) );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/copy.hpp:60:27: required from 'static void boost::numeric::odeint::copy_impl_sfinae<Container1, Container2, Enabler>::copy(const Container1&, Container2&) [with Container1 = std::vector<double>; Container2 = std::vector<double>; Enabler = void]'
60 | detail::do_copying( from , to , is_range_type() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/copy.hpp:70:58: required from 'static void boost::numeric::odeint::copy_impl<Container1, Container2>::copy(const Container1&, Container2&) [with Container1 = std::vector<double>; Container2 = std::vector<double>]'
70 | copy_impl_sfinae< Container1 , Container2 >::copy( from , to );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/copy.hpp:78:47: required from 'void boost::numeric::odeint::copy(const Container1&, Container2&) [with Container1 = std::vector<double>; Container2 = std::vector<double>]'
78 | copy_impl< Container1 , Container2 >::copy( from , to );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/stepper/controlled_runge_kutta.hpp:344:41: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::SinglePassRangeConcept<T>::~SinglePassRangeConcept() [with T = const std::vector<double>]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept)
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::CopyConstructible<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:167:5: required from 'struct boost::CopyConstructible<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:125:16: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
125 | struct IncrementableIteratorConcept : CopyConstructible<Iterator>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::CopyConstructible<TT>::~CopyConstructible() [with TT = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:167:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
167 | BOOST_CONCEPT_USAGE(CopyConstructible) {
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag> >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:208:5: required from 'struct boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag> >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag> >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::Convertible<X, Y>::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::incrementable_traversal_tag]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
208 | BOOST_CONCEPT_USAGE(Convertible) {
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:136:13: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::IncrementableIteratorConcept<Iterator>::~IncrementableIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:136:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
136 | BOOST_CONCEPT_USAGE(IncrementableIteratorConcept)
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::EqualityComparable<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:233:5: required from 'struct boost::EqualityComparable<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::EqualityComparable<TT>::~EqualityComparable() [with TT = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:233:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
233 | BOOST_CONCEPT_USAGE(EqualityComparable) {
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag> >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:208:5: required from 'struct boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag> >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag> >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::Convertible<X, Y>::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::single_pass_traversal_tag]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
208 | BOOST_CONCEPT_USAGE(Convertible) {
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:158:13: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::SinglePassIteratorConcept<Iterator>::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept)
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::CopyConstructible<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:167:5: required from 'struct boost::CopyConstructible<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:125:16: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
125 | struct IncrementableIteratorConcept : CopyConstructible<Iterator>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::CopyConstructible<TT>::~CopyConstructible() [with TT = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:167:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
167 | BOOST_CONCEPT_USAGE(CopyConstructible) {
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:136:13: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::IncrementableIteratorConcept<Iterator>::~IncrementableIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:136:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
136 | BOOST_CONCEPT_USAGE(IncrementableIteratorConcept)
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::EqualityComparable<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:233:5: required from 'struct boost::EqualityComparable<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::EqualityComparable<TT>::~EqualityComparable() [with TT = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:233:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
233 | BOOST_CONCEPT_USAGE(EqualityComparable) {
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:158:13: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::SinglePassIteratorConcept<Iterator>::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept)
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::SinglePassRangeConcept<std::vector<double> >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::SinglePassRangeConcept<std::vector<double> > >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:284:9: required from 'struct boost::SinglePassRangeConcept<std::vector<double> >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::SinglePassRangeConcept<std::vector<double> >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::SinglePassRangeConcept<std::vector<double> > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::SinglePassRangeConcept<std::vector<double> > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::SinglePassRangeConcept<T>::~SinglePassRangeConcept() [with T = std::vector<double>]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept)
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::SinglePassRangeConcept<const std::vector<double> >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::SinglePassRangeConcept<const std::vector<double> > >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:284:9: required from 'struct boost::SinglePassRangeConcept<const std::vector<double> >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::SinglePassRangeConcept<const std::vector<double> >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::SinglePassRangeConcept<const std::vector<double> > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::SinglePassRangeConcept<const std::vector<double> > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; Observer = null_observer; size_t = long unsigned int]'
42 | return detail::integrate_adaptive(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^
43 | stepper , system , start_state ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
44 | start_time , end_time , dt ,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
45 | observer , stepper_category() );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta<runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, range_algebra, default_operations, initially_resizer>, default_error_checker<double, range_algebra, default_operations>, default_step_adjuster<double, double>, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper<secsse::ode_standard<secsse::OdeVariant::ct_condition> >; State = std::vector<double>; Time = double; size_t = long unsigned int]'
83 | return integrate_adaptive( stepper , system , start_state , start_time , end_time , dt , null_observer() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta<boost::numeric::odeint::runge_kutta_cash_karp54<std::vector<double>, double, std::vector<double>, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker<double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations>, boost::numeric::odeint::default_step_adjuster<double, double>, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard<secsse::OdeVariant::ct_condition>; STATE = std::vector<double>]'
48 | bno::integrate_adaptive(stepper, std::ref(ode), (*y),
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
49 | time_type{t0}, time_type{t1}, time_type{dt});
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = std::unique_ptr<secsse::ode_standard<secsse::OdeVariant::ct_condition>, std::default_delete<secsse::ode_standard<secsse::OdeVariant::ct_condition> > >; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard<secsse::OdeVariant::ct_condition>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string<char>]'
76 | odeintcpp::integrate(method,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
77 | std::move(od),
| ~~~~~~~~~~~~~~
78 | &init_state, // state vector
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | 0.0, // t0
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | t, // t1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
81 | t * 0.01,
| ~~~~~~~~~
82 | atol,
| ~~~~~
83 | rtol);
| ~~~~~
secsse_loglik.cpp:136:24: required from here
136 | return ct_condition(std::make_unique<ode_standard<OdeVariant::ct_condition>>(ll, mus, Q), state, t, method, atol, rtol);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::SinglePassRangeConcept<T>::~SinglePassRangeConcept() [with T = const std::vector<double>]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept)
| ^~~~~~~~~~~~~~~~~~~
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/concept/assert.hpp:35,
from /data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:20,
from /data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:19,
from /data/gannet/ripley/R/test-dev/BH/include/boost/range/size_type.hpp:20,
from /data/gannet/ripley/R/test-dev/BH/include/boost/range/size.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/range/functions.hpp:20,
from /data/gannet/ripley/R/test-dev/BH/include/boost/range.hpp:18,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/resize.hpp:22,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/state_wrapper.hpp:26,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:33:
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::CopyConstructible<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:167:5: required from 'struct boost::CopyConstructible<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:125:16: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
125 | struct IncrementableIteratorConcept : CopyConstructible<Iterator>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:31:
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag> >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:208:5: required from 'struct boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag> >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag> >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_<void (*)(boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>)>'
72 | struct requirement_<void(*)(Model)>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/iterator/iterator_concepts.hpp:114:7: [ skipping 23 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>]':
/data/gannet/ripley/R/test-dev/BH/include/boost/iterator/iterator_concepts.hpp:114:7: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::Convertible<X, Y>::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::incrementable_traversal_tag]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
208 | BOOST_CONCEPT_USAGE(Convertible) {
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:136:13: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::EqualityComparable<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:233:5: required from 'struct boost::EqualityComparable<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag> >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:208:5: required from 'struct boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag> >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag> >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_<void (*)(boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>)>'
72 | struct requirement_<void(*)(Model)>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:152:13: [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>]':
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:152:13: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_<void (*)(boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >)>'
72 | struct requirement_<void(*)(Model)>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:278:9: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::Convertible<X, Y>::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::single_pass_traversal_tag]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
208 | BOOST_CONCEPT_USAGE(Convertible) {
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:158:13: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_<void (*)(boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >)>'
72 | struct requirement_<void(*)(Model)>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:278:9: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:278:9: required from 'struct boost::SinglePassRangeConcept<std::vector<double> >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::SinglePassRangeConcept<std::vector<double> >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::SinglePassRangeConcept<std::vector<double> > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::SinglePassRangeConcept<std::vector<double> > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_<void (*)(boost::SinglePassRangeConcept<std::vector<double> >)>'
72 | struct requirement_<void(*)(Model)>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/size.hpp:62:9: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::SinglePassIteratorConcept<Iterator>::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept)
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::CopyConstructible<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:167:5: required from 'struct boost::CopyConstructible<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:125:16: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
125 | struct IncrementableIteratorConcept : CopyConstructible<Iterator>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:136:13: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::EqualityComparable<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:233:5: required from 'struct boost::EqualityComparable<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:158:13: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_<void (*)(boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >)>'
72 | struct requirement_<void(*)(Model)>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:281:9: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:281:9: required from 'struct boost::SinglePassRangeConcept<std::vector<double> >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::SinglePassRangeConcept<std::vector<double> >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::SinglePassRangeConcept<std::vector<double> > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::SinglePassRangeConcept<std::vector<double> > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_<void (*)(boost::SinglePassRangeConcept<std::vector<double> >)>'
72 | struct requirement_<void(*)(Model)>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/size.hpp:62:9: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::SinglePassIteratorConcept<Iterator>::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept)
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::SinglePassRangeConcept<std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:284:9: required from 'struct boost::SinglePassRangeConcept<std::vector<double> >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::SinglePassRangeConcept<std::vector<double> >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::SinglePassRangeConcept<std::vector<double> > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::SinglePassRangeConcept<std::vector<double> > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_<void (*)(boost::SinglePassRangeConcept<std::vector<double> >)>'
72 | struct requirement_<void(*)(Model)>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/size.hpp:62:9: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::SinglePassRangeConcept<std::vector<double> >]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::SinglePassRangeConcept<std::vector<double> >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/range/size.hpp:62:9: required from 'typename boost::range_size<const SinglePassRange>::type boost::size(const SinglePassRange&) [with SinglePassRange = std::vector<double>; typename range_size<const SinglePassRange>::type = long unsigned int]'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/same_size.hpp:43:29: required from 'static bool boost::numeric::odeint::same_size_impl_sfinae<State1, State2, Enabler>::same_size(const State1&, const State2&) [with State1 = std::vector<double>; State2 = std::vector<double>; Enabler = void]'
43 | return ( boost::size( x1 ) == boost::size( x2 ) );
| ~~~~~~~~~~~^~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/same_size.hpp:55:67: required from 'static bool boost::numeric::odeint::same_size_impl<State1, State2>::same_size(const State1&, const State2&) [with State1 = std::vector<double>; State2 = std::vector<double>]'
55 | return same_size_impl_sfinae< State1 , State2 >::same_size( x1 , x2 );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/same_size.hpp:64:56: required from 'bool boost::numeric::odeint::same_size(const State1&, const State2&) [with State1 = std::vector<double>; State2 = std::vector<double>]'
64 | return same_size_impl< State1 , State2 >::same_size( x1 , x2 );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/resizer.hpp:33:20: required from 'bool boost::numeric::odeint::adjust_size_by_resizeability(ResizeWrappedState&, const State&, boost::true_type) [with ResizeWrappedState = state_wrapper<std::vector<double>, void>; State = std::vector<double>; boost::true_type = boost::integral_constant<bool, true>]'
33 | if ( !same_size( x.m_v , y ) )
| ~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/stepper/controlled_runge_kutta.hpp:495:44: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::SinglePassRangeConcept<T>::~SinglePassRangeConcept() [with T = std::vector<double>]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept)
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::SinglePassRangeConcept<const std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:284:9: required from 'struct boost::SinglePassRangeConcept<const std::vector<double> >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::SinglePassRangeConcept<const std::vector<double> >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::SinglePassRangeConcept<const std::vector<double> > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::SinglePassRangeConcept<const std::vector<double> > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_<void (*)(boost::SinglePassRangeConcept<const std::vector<double> >)>'
72 | struct requirement_<void(*)(Model)>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/algorithm/equal.hpp:174:13: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::SinglePassRangeConcept<const std::vector<double> >]'
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::SinglePassRangeConcept<const std::vector<double> >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/range/algorithm/equal.hpp:174:13: required from 'OutputIterator boost::range::copy(const SinglePassRange&, OutputIterator) [with SinglePassRange = std::vector<double>; OutputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/copy.hpp:37:27: required from 'void boost::numeric::odeint::detail::do_copying(const Container1&, Container2&, mpl_::true_) [with Container1 = std::vector<double>; Container2 = std::vector<double>; mpl_::true_ = mpl_::bool_<true>]'
37 | boost::range::copy( from , boost::begin( to ) );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/copy.hpp:60:27: required from 'static void boost::numeric::odeint::copy_impl_sfinae<Container1, Container2, Enabler>::copy(const Container1&, Container2&) [with Container1 = std::vector<double>; Container2 = std::vector<double>; Enabler = void]'
60 | detail::do_copying( from , to , is_range_type() );
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/copy.hpp:70:58: required from 'static void boost::numeric::odeint::copy_impl<Container1, Container2>::copy(const Container1&, Container2&) [with Container1 = std::vector<double>; Container2 = std::vector<double>]'
70 | copy_impl_sfinae< Container1 , Container2 >::copy( from , to );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/util/copy.hpp:78:47: required from 'void boost::numeric::odeint::copy(const Container1&, Container2&) [with Container1 = std::vector<double>; Container2 = std::vector<double>]'
78 | copy_impl< Container1 , Container2 >::copy( from , to );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/odeint/stepper/controlled_runge_kutta.hpp:344:41: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::SinglePassRangeConcept<T>::~SinglePassRangeConcept() [with T = const std::vector<double>]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept)
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::CopyConstructible<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:167:5: required from 'struct boost::CopyConstructible<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:125:16: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
125 | struct IncrementableIteratorConcept : CopyConstructible<Iterator>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::CopyConstructible<TT>::~CopyConstructible() [with TT = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:167:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
167 | BOOST_CONCEPT_USAGE(CopyConstructible) {
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag> >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:208:5: required from 'struct boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag>]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag> >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::incrementable_traversal_tag> >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 24 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::Convertible<X, Y>::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::incrementable_traversal_tag]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
208 | BOOST_CONCEPT_USAGE(Convertible) {
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:136:13: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::IncrementableIteratorConcept<Iterator>::~IncrementableIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:136:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
136 | BOOST_CONCEPT_USAGE(IncrementableIteratorConcept)
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::EqualityComparable<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:233:5: required from 'struct boost::EqualityComparable<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::EqualityComparable<TT>::~EqualityComparable() [with TT = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:233:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
233 | BOOST_CONCEPT_USAGE(EqualityComparable) {
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag> >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:208:5: required from 'struct boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag>]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag> >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::Convertible<boost::iterators::random_access_traversal_tag, boost::iterators::single_pass_traversal_tag> >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 23 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::Convertible<X, Y>::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::single_pass_traversal_tag]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
208 | BOOST_CONCEPT_USAGE(Convertible) {
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:158:13: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<double*, std::vector<double> > > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::SinglePassIteratorConcept<Iterator>::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept)
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::CopyConstructible<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:167:5: required from 'struct boost::CopyConstructible<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:125:16: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
125 | struct IncrementableIteratorConcept : CopyConstructible<Iterator>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::CopyConstructible<TT>::~CopyConstructible() [with TT = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:167:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
167 | BOOST_CONCEPT_USAGE(CopyConstructible) {
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:136:13: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::IncrementableIteratorConcept<Iterator>::~IncrementableIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:136:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
136 | BOOST_CONCEPT_USAGE(IncrementableIteratorConcept)
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::EqualityComparable<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:233:5: required from 'struct boost::EqualityComparable<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::EqualityComparable<TT>::~EqualityComparable() [with TT = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/concept_check.hpp:233:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
233 | BOOST_CONCEPT_USAGE(EqualityComparable) {
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:158:13: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator<const double*, std::vector<double> > > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::SinglePassIteratorConcept<Iterator>::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept)
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::SinglePassRangeConcept<std::vector<double> >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::SinglePassRangeConcept<std::vector<double> > >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:284:9: required from 'struct boost::SinglePassRangeConcept<std::vector<double> >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::SinglePassRangeConcept<std::vector<double> >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::SinglePassRangeConcept<std::vector<double> > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::SinglePassRangeConcept<std::vector<double> > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::SinglePassRangeConcept<T>::~SinglePassRangeConcept() [with T = std::vector<double>]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept)
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements<Model>::~usage_requirements() [with Model = boost::SinglePassRangeConcept<const std::vector<double> >]':
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement<boost::concepts::failed************ Model::************>::failed() [with Model = boost::concepts::usage_requirements<boost::SinglePassRangeConcept<const std::vector<double> > >]'
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:284:9: required from 'struct boost::SinglePassRangeConcept<const std::vector<double> >'
92 | &::boost::concepts::requirement_<ModelFnPtr>::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template<class Model> boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints<Model, (& Model::constraints)>*) [with Model = boost::SinglePassRangeConcept<const std::vector<double> >]'
32 | inline yes has_constraints_(Model*, wrap_constraints<Model,&Model::constraints>* = 0);
| ^~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied<boost::SinglePassRangeConcept<const std::vector<double> > >::value'
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied<boost::SinglePassRangeConcept<const std::vector<double> > >'
45 | typedef boost::integral_constant<bool, value> type;
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector<double>; ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>*; std::string = std::__cxx11::basic_string<char>]'
77 | integrate(bno::make_controlled<bno::runge_kutta_cash_karp54<STATE>>(atol,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | rtol),
| ~~~~~~
79 | *ode, y, t0, t1, dt);
| ~~~~~~~~~~~~~~~~~~~~
secsse_loglik.h:197:27: required from 'void secsse::Integrator<ODE>::do_integrate(std::vector<double>&, double, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
197 | odeintcpp::integrate(method_,
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
198 | od_.get(),
| ~~~~~~~~~~
199 | &state,
| ~~~~~~~
200 | t0,
| ~~~
201 | t1,
| ~~~
202 | dtf * (t1 - t0),
| ~~~~~~~~~~~~~~~~
203 | atol_,
| ~~~~~~
204 | rtol_);
| ~~~~~~
secsse_loglik.h:181:7: required from 'void secsse::Integrator<ODE>::operator()(std::vector<double>&, double, double) const [with ODE = secsse::ode_standard<secsse::OdeVariant::complete_tree>]'
181 | do_integrate(state, t0, t1, SECSSE_DEFAULT_DTF);
| ^~~~~~~~~~~~
secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t<terse::inode_t>&, std::vector<std::vector<double> >&) [with INTEGRATOR = Integrator<ode_standard<secsse::OdeVariant::complete_tree> >; inodes_t<terse::inode_t> = std::vector<terse::inode_t, std::allocator<terse::inode_t> >]'
242 | integrator(node_M, 0.0, root_node.desc[1].time);
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard<secsse::OdeVariant::complete_tree>; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string<char>; size_t = long unsigned int]'
41 | calc_ll(integrator, inodes, tstates);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
secsse_eval.cpp:113:13: required from here
113 | ? eval(std::make_unique<ode_standard<OdeVariant::complete_tree>>(ll, mus, Q), ances, states, forTime, method, atol, rtol, num_steps)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull]
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
/data/gannet/ripley/R/test-dev/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::SinglePassRangeConcept<T>::~SinglePassRangeConcept() [with T = const std::vector<double>]'
37 | ~model()
| ^
/data/gannet/ripley/R/test-dev/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro 'BOOST_CONCEPT_USAGE'
284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept)
| ^~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o secsse.so RcppExports.o secsse_eval.o secsse_loglik.o secsse_sim.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/secsse/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/secsse/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/secsse/src'
installing to /data/gannet/ripley/R/packages/tests-devel/secsse.Rcheck/00LOCK-secsse/00new/secsse/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (secsse)