• using R Under development (unstable) (2025-02-28 r87848)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)     GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
• running under: Fedora Linux 40 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘sars/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘sars’ version ‘1.3.7’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘sars’ can be installed ... [28s/78s] OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [5s/17s] OK
• checking whether the package can be loaded with stated dependencies ... [5s/12s] OK
• checking whether the package can be unloaded cleanly ... [5s/16s] OK
• checking whether the namespace can be loaded with stated dependencies ... [5s/19s] OK
• checking whether the namespace can be unloaded cleanly ... [5s/20s] OK
• checking loading without being on the library search path ... [5s/28s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [53s/289s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking R/sysdata.rda ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [139s/310s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [140s/236s] ERROR   Running ‘testthat.R’ [139s/235s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(sars)   >   > test_check("sars")       Now attempting to fit the 20 SAR models:      ── multi_sars ────────────────────────────────────────────── multi-model SAR ──   → power : ✔   → powerR : ✔   → epm1 : ✔   → epm2 : ✔   → p1 : ✔   → p2 : ✔   → loga : ✔   → koba : ✔   → monod : ✔   → negexpo : ✔   → chapman : ✔   → weibull3 : ✔   → asymp : ✔   → ratio : ✔   → gompertz : ✔   → weibull4 : ✔   → betap : ✔   → logistic : ✔   → heleg : ✔   → linear : ✔      Model fitting completed - all models succesfully fitted. Now undertaking model validation checks. Additional models will be excluded if necessary:      16 remaining models used to construct the multi SAR:    Power, PowerR, Extended Power model 2, Persistence function 1, Persistence function 2, Logarithmic, Kobayashi, Monod, Negative exponential, Chapman Richards, Cumulative Weibull 3 par., Rational function, Gompertz, Beta-P cumulative, Logistic(Standard), Heleg(Logistic)   ────────────────────────────────────────────────────────────────────────────────       Now attempting to fit the 20 SAR models:      ── multi_sars ────────────────────────────────────────────── multi-model SAR ──   → power : ✔   → powerR : ✔   → epm1 : ✔   → epm2 : ✔   → p1 : ✔   → p2 : ✔   → loga : ✔   → koba : ✔   → monod : ✔   → negexpo : ✔   → chapman : Warning: could not compute parameters statistics   → weibull3 : ✔   → asymp : ✔   → ratio : Warning: could not compute parameters statistics   → gompertz : ✔   → weibull4 : Warning: could not compute parameters statistics   → betap : Warning: could not compute parameters statistics   → logistic : ✔   → heleg : ✔   → linear : ✔      No model validation checks selected      20 remaining models used to construct the multi SAR:    Power, PowerR, Extended Power model 1, Extended Power model 2, Persistence function 1, Persistence function 2, Logarithmic, Kobayashi, Monod, Negative exponential, Chapman Richards, Cumulative Weibull 3 par., Asymptotic regression, Rational function, Gompertz, Cumulative Weibull 4 par., Beta-P cumulative, Logistic(Standard), Heleg(Logistic), Linear model   ────────────────────────────────────────────────────────────────────────────────       Now attempting to fit the 2 SAR models:      ── multi_sars ────────────────────────────────────────────── multi-model SAR ──   → linear : ✔   → power : ✔       Now attempting to fit the 3 SAR models:      ── multi_sars ────────────────────────────────────────────── multi-model SAR ──   → power : ✔   → koba : ✔   → ratio : ✔   [ FAIL 2 | WARN 0 | SKIP 20 | PASS 147 ]      ══ Skipped tests (20) ══════════════════════════════════════════════════════════   • On CRAN (20): 'test_crit_method.R:5:3', 'test_crit_method.R:96:3',     'test_grid_start.R:4:3', 'test_indiv_CIs.R:5:3', 'test_logistic.R:5:3',     'test_multi.R:4:3', 'test_multi.R:30:3', 'test_multi.R:45:3',     'test_multi.R:76:3', 'test_multi.R:89:3', 'test_p2.R:4:3',     'test_pred.R:27:3', 'test_shape.R:4:3', 'test_thresholds.R:5:3',     'test_thresholds.R:72:3', 'test_thresholds.R:94:3',     'test_thresholds.R:133:3', 'test_warnings.R:5:3', 'test_weibull3.R:4:3',     'test_weibull3.R:15:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_lin_pow.R:37:3'): lin_pow returns warning for all identical species ──   Error in `grepl(as.character(pattern), x, ignore.case, FALSE, perl, fixed,       useBytes, FALSE)`: NA in coercion to bool   Backtrace:       ▆    1. └─testthat::expect_warning(...) at test_lin_pow.R:37:3    2. └─testthat:::compare_messages(...)    3. └─base::grepl(regexp, messages, ...)   ── Error ('test_power.R:40:3'): sar_power returns warning for all identical species ──   Error in `grepl(as.character(pattern), x, ignore.case, FALSE, perl, fixed,       useBytes, FALSE)`: NA in coercion to bool   Backtrace:       ▆    1. └─testthat::expect_warning(...) at test_power.R:40:3    2. └─testthat:::compare_messages(...)    3. └─base::grepl(regexp, messages, ...)      [ FAIL 2 | WARN 0 | SKIP 20 | PASS 147 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2m/10m] OK
• checking PDF version of manual ... [11s/13s] OK
• checking HTML version of manual ... [6s/32s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR