* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/rock.Rcheck’ * using R Under development (unstable) (2025-02-27 r87831) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) * running under: Fedora Linux 40 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘rock/DESCRIPTION’ ... OK * this is package ‘rock’ version ‘0.8.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘rock’ can be installed ... [18s/39s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/rock-00install.html' for details. * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘rmd_templates.Rd’ ‘writing_sources.Rd’ * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [38s/60s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [31s/36s] ERROR Running examples in ‘rock-Ex.R’ failed The error most likely occurred in: > ### Name: qna_to_tlm > ### Title: Convert a QNA network to Linear Topic Map format > ### Aliases: qna_to_tlm > > ### ** Examples > > ### Get path to example source > examplePath <- + system.file("extdata", package="rock"); > > ### Read a souce coded with the Qualitative Network Approach > qnaExample <- + rock::parse_source( + file.path( + examplePath, + "network-example-1.rock" + ) + ); > > ### Convert and show the topic map > cat( + rock::qna_to_tlm( + qnaExample + ), + sep="\n" + ); Error in unlist(df$from, df$to) : 'recursive' must be a length-1 vector Calls: cat -> <Anonymous> -> lapply -> FUN -> unique -> unlist Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [68s/71s] OK Running ‘testthat.R’ [67s/71s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [18s/19s] OK * checking PDF version of manual ... [12s/13s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE