* installing *source* package ‘rmatio’ ...
** package ‘rmatio’ successfully unpacked and MD5 sums checked
** using staged installation
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking inttypes.h... yes
checking stdlib.h... yes
checking stdint.h... yes
checking strings.h... yes
checking string.h... yes
checking sys/stat.h... yes
checking sys/types.h... yes
checking unistd.h... 
checking for zlib... yes
checking size of char... 1
checking size of short... 2
checking size of double... 8
checking size of float... 4
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of size_t... 8
checking size of void *... 8
checking for mat_int8_t... int8_t
checking for mat_int16_t... int16_t
checking for mat_int32_t... int32_t
checking for mat_int64_t... int64_t
checking for mat_uint8_t... uint8_t
checking for mat_uint16_t... uint16_t
checking for mat_uint32_t... uint32_t
checking for mat_uint64_t... uint64_t
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/matio/config.h
config.status: src/matio/config.h is unchanged
** libs
using C compiler: ‘gcc-14 (GCC) 14.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/rmatio/src'
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c matio/endian.c -o matio/endian.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c matio/inflate.c -o matio/inflate.o
matio/inflate.c: In function 'InflateSkip':
matio/inflate.c:77:22: warning: storing the address of local variable 'uncomp_buf' in '*z.next_out' [-Wdangling-pointer=]
   77 |         z->next_out  = uncomp_buf;
      |         ~~~~~~~~~~~~~^~~~~~~~~~~~
matio/inflate.c:51:31: note: 'uncomp_buf' declared here
   51 |     mat_uint8_t comp_buf[512],uncomp_buf[512];
      |                               ^~~~~~~~~~
matio/inflate.c:49:35: note: 'z' declared here
   49 | InflateSkip(mat_t *mat, z_streamp z, int nbytes)
      |                         ~~~~~~~~~~^
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c matio/mat4.c -o matio/mat4.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c matio/mat5.c -o matio/mat5.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c matio/mat.c -o matio/mat.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c matio/matvar_cell.c -o matio/matvar_cell.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c matio/matvar_struct.c -o matio/matvar_struct.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c matio/read_data.c -o matio/read_data.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c rmatio.c -o rmatio.o
gcc-14 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o rmatio.so matio/endian.o matio/inflate.o matio/mat4.o matio/mat5.o matio/mat.o matio/matvar_cell.o matio/matvar_struct.o matio/read_data.o rmatio.o -lz
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/rmatio/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/rmatio/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/rmatio/src'
installing to /data/gannet/ripley/R/packages/tests-devel/rmatio.Rcheck/00LOCK-rmatio/00new/rmatio/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rmatio)