* installing *source* package ‘rkriging’ ...
** this is package ‘rkriging’ version ‘1.0.1’
** package ‘rkriging’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/rkriging/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c export.cpp -o export.o
In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp.h:46,
from /data/gannet/ripley/R/test-dev/RcppEigen/include/RcppEigen.h:26,
from export.cpp:1:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h: In instantiation of ‘void Rcpp::standard_delete_finalizer(T*) [with T = Kernel]’:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:38:35: required from ‘class Rcpp::class_<Kernel>’
38 | typedef Rcpp::XPtr<Class> XP ;
| ^~
export.cpp:7:34: required from here
7 | Rcpp::class_<Kernel>("Kernel")
| ^
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of abstract class type ‘Kernel’ which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor]
31 | delete obj;
| ^~~~~~~~~~
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h: In instantiation of ‘void Rcpp::standard_delete_finalizer(T*) [with T = BaseKernel]’:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:38:35: required from ‘class Rcpp::class_<BaseKernel>’
38 | typedef Rcpp::XPtr<Class> XP ;
| ^~
export.cpp:14:42: required from here
14 | Rcpp::class_<BaseKernel>("BaseKernel")
| ^
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of abstract class type ‘BaseKernel’ which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor]
31 | delete obj;
| ^~~~~~~~~~
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h: In instantiation of ‘void Rcpp::standard_delete_finalizer(T*) [with T = GaussianKernel]’:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:38:35: required from ‘class Rcpp::class_<GaussianKernel>’
38 | typedef Rcpp::XPtr<Class> XP ;
| ^~
export.cpp:18:50: required from here
18 | Rcpp::class_<GaussianKernel>("GaussianKernel")
| ^
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of polymorphic class type ‘GaussianKernel’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
31 | delete obj;
| ^~~~~~~~~~
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h: In instantiation of ‘void Rcpp::standard_delete_finalizer(T*) [with T = RQKernel]’:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:38:35: required from ‘class Rcpp::class_<RQKernel>’
38 | typedef Rcpp::XPtr<Class> XP ;
| ^~
export.cpp:24:38: required from here
24 | Rcpp::class_<RQKernel>("RQKernel")
| ^
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of polymorphic class type ‘RQKernel’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
31 | delete obj;
| ^~~~~~~~~~
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h: In instantiation of ‘void Rcpp::standard_delete_finalizer(T*) [with T = Matern12Kernel]’:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:38:35: required from ‘class Rcpp::class_<Matern12Kernel>’
38 | typedef Rcpp::XPtr<Class> XP ;
| ^~
export.cpp:30:50: required from here
30 | Rcpp::class_<Matern12Kernel>("Matern12Kernel")
| ^
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of polymorphic class type ‘Matern12Kernel’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
31 | delete obj;
| ^~~~~~~~~~
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h: In instantiation of ‘void Rcpp::standard_delete_finalizer(T*) [with T = Matern32Kernel]’:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:38:35: required from ‘class Rcpp::class_<Matern32Kernel>’
38 | typedef Rcpp::XPtr<Class> XP ;
| ^~
export.cpp:36:50: required from here
36 | Rcpp::class_<Matern32Kernel>("Matern32Kernel")
| ^
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of polymorphic class type ‘Matern32Kernel’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
31 | delete obj;
| ^~~~~~~~~~
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h: In instantiation of ‘void Rcpp::standard_delete_finalizer(T*) [with T = Matern52Kernel]’:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:38:35: required from ‘class Rcpp::class_<Matern52Kernel>’
38 | typedef Rcpp::XPtr<Class> XP ;
| ^~
export.cpp:42:50: required from here
42 | Rcpp::class_<Matern52Kernel>("Matern52Kernel")
| ^
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of polymorphic class type ‘Matern52Kernel’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
31 | delete obj;
| ^~~~~~~~~~
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h: In instantiation of ‘void Rcpp::standard_delete_finalizer(T*) [with T = MaternKernel]’:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:38:35: required from ‘class Rcpp::class_<MaternKernel>’
38 | typedef Rcpp::XPtr<Class> XP ;
| ^~
export.cpp:48:46: required from here
48 | Rcpp::class_<MaternKernel>("MaternKernel")
| ^
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of polymorphic class type ‘MaternKernel’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
31 | delete obj;
| ^~~~~~~~~~
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h: In instantiation of ‘void Rcpp::standard_delete_finalizer(T*) [with T = UDFKernel]’:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:38:35: required from ‘class Rcpp::class_<UDFKernel>’
38 | typedef Rcpp::XPtr<Class> XP ;
| ^~
export.cpp:54:40: required from here
54 | Rcpp::class_<UDFKernel>("UDFKernel")
| ^
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of polymorphic class type ‘UDFKernel’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
31 | delete obj;
| ^~~~~~~~~~
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h: In instantiation of ‘void Rcpp::standard_delete_finalizer(T*) [with T = MultiplicativeRQKernel]’:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:38:35: required from ‘class Rcpp::class_<MultiplicativeRQKernel>’
38 | typedef Rcpp::XPtr<Class> XP ;
| ^~
export.cpp:60:66: required from here
60 | Rcpp::class_<MultiplicativeRQKernel>("MultiplicativeRQKernel")
| ^
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of polymorphic class type ‘MultiplicativeRQKernel’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
31 | delete obj;
| ^~~~~~~~~~
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h: In instantiation of ‘void Rcpp::standard_delete_finalizer(T*) [with T = MultiplicativeMaternKernel]’:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:38:35: required from ‘class Rcpp::class_<MultiplicativeMaternKernel>’
38 | typedef Rcpp::XPtr<Class> XP ;
| ^~
export.cpp:66:74: required from here
66 | Rcpp::class_<MultiplicativeMaternKernel>("MultiplicativeMaternKernel")
| ^
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of polymorphic class type ‘MultiplicativeMaternKernel’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
31 | delete obj;
| ^~~~~~~~~~
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h: In instantiation of ‘void Rcpp::standard_delete_finalizer(T*) [with T = MultiplicativeUDFKernel]’:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:38:35: required from ‘class Rcpp::class_<MultiplicativeUDFKernel>’
38 | typedef Rcpp::XPtr<Class> XP ;
| ^~
export.cpp:72:68: required from here
72 | Rcpp::class_<MultiplicativeUDFKernel>("MultiplicativeUDFKernel")
| ^
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of polymorphic class type ‘MultiplicativeUDFKernel’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
31 | delete obj;
| ^~~~~~~~~~
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h: In instantiation of ‘void Rcpp::standard_delete_finalizer(T*) [with T = Kriging]’:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:38:35: required from ‘class Rcpp::class_<Kriging>’
38 | typedef Rcpp::XPtr<Class> XP ;
| ^~
export.cpp:82:36: required from here
82 | Rcpp::class_<Kriging>("Kriging")
| ^
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of abstract class type ‘Kriging’ which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor]
31 | delete obj;
| ^~~~~~~~~~
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h: In instantiation of ‘void Rcpp::standard_delete_finalizer(T*) [with T = OrdinaryKriging]’:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:38:35: required from ‘class Rcpp::class_<OrdinaryKriging>’
38 | typedef Rcpp::XPtr<Class> XP ;
| ^~
export.cpp:106:52: required from here
106 | Rcpp::class_<OrdinaryKriging>("OrdinaryKriging")
| ^
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of polymorphic class type ‘OrdinaryKriging’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
31 | delete obj;
| ^~~~~~~~~~
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h: In instantiation of ‘void Rcpp::standard_delete_finalizer(T*) [with T = LimitKriging]’:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:38:35: required from ‘class Rcpp::class_<LimitKriging>’
38 | typedef Rcpp::XPtr<Class> XP ;
| ^~
export.cpp:111:46: required from here
111 | Rcpp::class_<LimitKriging>("LimitKriging")
| ^
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of polymorphic class type ‘LimitKriging’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
31 | delete obj;
| ^~~~~~~~~~
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h: In instantiation of ‘void Rcpp::standard_delete_finalizer(T*) [with T = RationalKriging]’:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:38:35: required from ‘class Rcpp::class_<RationalKriging>’
38 | typedef Rcpp::XPtr<Class> XP ;
| ^~
export.cpp:116:52: required from here
116 | Rcpp::class_<RationalKriging>("RationalKriging")
| ^
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of polymorphic class type ‘RationalKriging’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
31 | delete obj;
| ^~~~~~~~~~
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h: In instantiation of ‘void Rcpp::standard_delete_finalizer(T*) [with T = GeneralizedRationalKriging]’:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:38:35: required from ‘class Rcpp::class_<GeneralizedRationalKriging>’
38 | typedef Rcpp::XPtr<Class> XP ;
| ^~
export.cpp:122:74: required from here
122 | Rcpp::class_<GeneralizedRationalKriging>("GeneralizedRationalKriging")
| ^
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of polymorphic class type ‘GeneralizedRationalKriging’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
31 | delete obj;
| ^~~~~~~~~~
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h: In instantiation of ‘void Rcpp::standard_delete_finalizer(T*) [with T = UniversalKriging]’:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/module/class.h:38:35: required from ‘class Rcpp::class_<UniversalKriging>’
38 | typedef Rcpp::XPtr<Class> XP ;
| ^~
export.cpp:129:54: required from here
129 | Rcpp::class_<UniversalKriging>("UniversalKriging")
| ^
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of polymorphic class type ‘UniversalKriging’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
31 | delete obj;
| ^~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c kernel.cpp -o kernel.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c kriging.cpp -o kriging.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c utils.cpp -o utils.o
kriging.cpp: In member function ‘double GeneralizedRationalKriging::get_nllh(const Eigen::VectorXd&, const double&, double&, double&, Eigen::LLT<Eigen::Matrix<double, -1, -1>, 1>&, Eigen::VectorXd&, Eigen::VectorXd&, Eigen::VectorXd&, Eigen::VectorXd&)’:
kriging.cpp:338:9: warning: unused variable ‘nconv’ [-Wunused-variable]
338 | int nconv = eigs.compute(Spectra::SortRule::LargestAlge);
| ^~~~~
In file included from /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/Core:337,
from /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/Dense:1,
from /data/gannet/ripley/R/test-dev/RcppEigen/include/RcppEigenForward.h:28,
from /data/gannet/ripley/R/test-dev/RcppEigen/include/RcppEigen.h:25,
from kriging.cpp:5:
/data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h: In function ‘static void Eigen::internal::selfadjoint_product_impl<Lhs, LhsMode, false, Rhs, 0, true>::run(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; Lhs = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; int LhsMode = 17; Rhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >]’:
/data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:229:7: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized]
227 | internal::selfadjoint_matrix_vector_product<Scalar, Index, (internal::traits<ActualLhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
228 | int(LhsUpLo), bool(LhsBlasTraits::NeedToConjugate), bool(RhsBlasTraits::NeedToConjugate)>::run
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
229 | (
| ^
230 | lhs.rows(), // size
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
231 | &lhs.coeffRef(0,0), lhs.outerStride(), // lhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
232 | actualRhsPtr, // rhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
233 | actualDestPtr, // result info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
234 | actualAlpha // scale factor
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
235 | );
| ~
/data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:41:6: note: by argument 4 of type ‘const double*’ to ‘static void Eigen::internal::selfadjoint_matrix_vector_product<Scalar, Index, StorageOrder, UpLo, ConjugateLhs, ConjugateRhs, Version>::run(Index, const Scalar*, Index, const Scalar*, Scalar*, Scalar) [with Scalar = double; Index = long int; int StorageOrder = 0; int UpLo = 1; bool ConjugateLhs = false; bool ConjugateRhs = false; int Version = 0]’ declared here
41 | void selfadjoint_matrix_vector_product<Scalar,Index,StorageOrder,UpLo,ConjugateLhs,ConjugateRhs,Version>::run(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h: In function ‘static void Eigen::internal::selfadjoint_product_impl<Lhs, LhsMode, false, Rhs, 0, true>::run(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Lhs = const Eigen::Ref<const Eigen::Matrix<double, -1, -1>, 0, Eigen::OuterStride<> >; int LhsMode = 17; Rhs = Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >]’:
/data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:229:7: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized]
227 | internal::selfadjoint_matrix_vector_product<Scalar, Index, (internal::traits<ActualLhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
228 | int(LhsUpLo), bool(LhsBlasTraits::NeedToConjugate), bool(RhsBlasTraits::NeedToConjugate)>::run
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
229 | (
| ^
230 | lhs.rows(), // size
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
231 | &lhs.coeffRef(0,0), lhs.outerStride(), // lhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
232 | actualRhsPtr, // rhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
233 | actualDestPtr, // result info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
234 | actualAlpha // scale factor
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
235 | );
| ~
/data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:41:6: note: by argument 4 of type ‘const double*’ to ‘static void Eigen::internal::selfadjoint_matrix_vector_product<Scalar, Index, StorageOrder, UpLo, ConjugateLhs, ConjugateRhs, Version>::run(Index, const Scalar*, Index, const Scalar*, Scalar*, Scalar) [with Scalar = double; Index = long int; int StorageOrder = 0; int UpLo = 1; bool ConjugateLhs = false; bool ConjugateRhs = false; int Version = 0]’ declared here
41 | void selfadjoint_matrix_vector_product<Scalar,Index,StorageOrder,UpLo,ConjugateLhs,ConjugateRhs,Version>::run(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/Core:341:
/data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h: In function ‘static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]’:
/data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized]
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type ‘const double*’ to ‘static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]’ declared here
105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h: In function ‘static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >; Rhs = Eigen::Matrix<double, -1, 1>; Dest = Eigen::Matrix<double, -1, 1>; int Mode = 1]’:
/data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized]
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type ‘const double*’ to ‘static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 1; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]’ declared here
105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o rkriging.so RcppExports.o export.o kernel.o kriging.o utils.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/rkriging/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/rkriging/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/rkriging/src'
installing to /data/gannet/ripley/R/packages/tests-devel/rkriging.Rcheck/00LOCK-rkriging/00new/rkriging/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rkriging)