• using R Under development (unstable) (2025-12-21 r89215)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)     GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘retroharmonize/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘retroharmonize’ version ‘0.2.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘retroharmonize’ can be installed ... [12s/14s] OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [18s/22s] OK
• checking Rd files ... NOTE checkRd: (-1) harmonize_values.Rd:44: Lost braces; missing escapes or markup?     44 | \item{perl}{Use perl-like regex? Defaults to {FALSE}.}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking R/sysdata.rda ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... ERROR Running examples in ‘retroharmonize-Ex.R’ failed The error most likely occurred in: > ### Name: create_codebook > ### Title: Create a codebook > ### Aliases: create_codebook codebook_waves_create > > ### ** Examples > > create_codebook ( + survey = read_rds ( + system.file("examples", "ZA7576.rds", + package = "retroharmonize") + ) + ) Error in `bind_rows()`: ! Can't combine `..1$val_label_orig` <double> and `..2$val_label_orig` <character>. Backtrace:      ▆   1. ├─retroharmonize::create_codebook(...)   2. │ └─num_labels %>% bind_rows(char_labels) %>% ...   3. ├─dplyr::arrange(., .data$entry)   4. ├─dplyr::bind_rows(., char_labels)   5. │ └─vctrs::vec_rbind(!!!dots, .names_to = .id, .error_call = current_env())   6. └─vctrs (local) `<fn>`()   7. └─vctrs::vec_default_ptype2(...)   8. ├─base::withRestarts(...)   9. │ └─base (local) withOneRestart(expr, restarts[[1L]])  10. │ └─base (local) doWithOneRestart(return(expr), restart)  11. └─vctrs::stop_incompatible_type(...)  12. └─vctrs:::stop_incompatible(...)  13. └─vctrs:::stop_vctrs(...)  14. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [18s/22s] ERROR   Running ‘spelling.R’   Running ‘testthat.R’ [17s/20s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(retroharmonize)   >   > test_check("retroharmonize")   Saving _problems/test-codebook_create-12.R    dbl+lbl [1:7] 1, 0, 1, 1, 0, 8, 9    @ labels : Named num [1:4] 1 0 8 9     ..- attr(*, "names")= chr [1:4] "TRUST" "NOT TRUST" "DON'T KNOW" "INAP. HERE"    @ na_values: num [1:2] 8 9   Loading required package: dplyr      Attaching package: 'dplyr'      The following objects are masked from 'package:stats':          filter, lag      The following objects are masked from 'package:base':          intersect, setdiff, setequal, union         Attaching package: 'vctrs'      The following object is masked from 'package:dplyr':          data_frame         Attaching package: 'rlang'      The following object is masked from 'package:retroharmonize':          as_character      Survey ID: test   Survey ID: test2   Survey ID: test2   Survey ID: test2   Survey ID: test   [ FAIL 1 | WARN 23 | SKIP 3 | PASS 99 ]      ══ Skipped tests (3) ═══════════════════════════════════════════════════════════   • On CRAN (3): 'test-harmonize_na_values.R:18:3',     'test-labelled_spss_survey.R:136:1', 'test-subset_save_surveys.R:32:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-codebook_create.R:12:1'): (code run outside of `test_that()`) ──   <vctrs_error_ptype2/vctrs_error_incompatible_type/vctrs_error_incompatible/vctrs_error/rlang_error/error/condition>   Error in `bind_rows(., char_labels)`: Can't combine `..1$val_label_orig` <double> and `..2$val_label_orig` <character>.   Backtrace:        ▆     1. ├─retroharmonize::create_codebook(metadata) at test-codebook_create.R:12:1     2. │ └─num_labels %>% bind_rows(char_labels) %>% ...     3. ├─dplyr::arrange(., .data$entry)     4. ├─dplyr::bind_rows(., char_labels)     5. │ └─vctrs::vec_rbind(!!!dots, .names_to = .id, .error_call = current_env())     6. └─vctrs (local) `<fn>`()     7. └─vctrs::vec_default_ptype2(...)     8. ├─base::withRestarts(...)     9. │ └─base (local) withOneRestart(expr, restarts[[1L]])    10. │ └─base (local) doWithOneRestart(return(expr), restart)    11. └─vctrs::stop_incompatible_type(...)    12. └─vctrs:::stop_incompatible(...)    13. └─vctrs:::stop_vctrs(...)    14. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)      [ FAIL 1 | WARN 23 | SKIP 3 | PASS 99 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [94s/125s] OK
• checking PDF version of manual ... [8s/11s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 2 ERRORs, 1 NOTE