- using R Under development (unstable) (2025-02-15 r87726)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
- running under: Fedora Linux 40 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘replicateBE/DESCRIPTION’ ... OK
- this is package ‘replicateBE’ version ‘1.1.3’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘replicateBE’ can be installed ... [25s/65s] OK
See the install log for details.
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [6s/15s] OK
- checking whether the package can be loaded with stated dependencies ... [5s/13s] OK
- checking whether the package can be unloaded cleanly ... [5s/12s] OK
- checking whether the namespace can be loaded with stated dependencies ... [5s/15s] OK
- checking whether the namespace can be unloaded cleanly ... [6s/17s] OK
- checking loading without being on the library search path ... [6s/18s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [36s/103s] OK
- checking Rd files ... NOTE
checkRd: (-1) method.A.Rd:200-205: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.A.Rd:206-211: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.A.Rd:231-236: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.A.Rd:237-242: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.B.Rd:201-206: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.B.Rd:207-212: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.B.Rd:232-237: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) method.B.Rd:238-243: Lost braces in \itemize; \value handles \item{}{} directly
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [7s/21s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [32s/84s] ERROR
Running ‘testthat.R’ [31s/83s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(replicateBE)
> test_check("replicateBE")
[ FAIL 4 | WARN 8 | SKIP 4 | PASS 86 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• On CRAN (4): 'testthat.R:35:3', 'testthat.R:137:3', 'testthat.R:197:3',
'testthat.R:318:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('testthat.R:536:3'): method.B (Satterthwaite DF, CVwR, EL, 90% CI, PE) of rds29 ──
x[, c(10, 12, 17:21)] not equivalent to c(24.86467, 20.1358, 80, 125, 88.43243, 121.5886, 103.6937).
Component 1: Mean relative difference: 0.0538885308135
Component 5: Mean relative difference: 0.00885581372
Component 6: Mean relative difference: 0.010611995987
Component 7: Mean relative difference: 0.000831132301946
── Failure ('testthat.R:542:3'): method.B (Satterthwaite DF, CVwR, EL, 90% CI, PE) of rds30 ──
x[, c(10, 12, 17:21)] not equivalent to c(17.86417, 25.2277, 80, 125, 79.57553, 108.0676, 92.73371).
Component 1: Mean relative difference: 0.0497327016967
Component 5: Mean relative difference: 0.00794769327702
Component 6: Mean relative difference: 0.00801084394782
── Failure ('testthat.R:551:3'): method.B (Kenward-Roger DF, CVwR, EL, 90% CI, PE) of rds29 ──
x[, c(10, 12, 17:21)] not equivalent to c(25.15961, 20.1358, 80, 125, 88.42778, 121.595, 103.6937).
Component 1: Mean relative difference: 0.0027252470762
Component 5: Mean relative difference: 0.00858112232388
Component 6: Mean relative difference: 0.0103320385289
Component 7: Mean relative difference: 0.000831132301946
── Failure ('testthat.R:557:3'): method.B (Kenward-Roger DF, CVwR, EL, 90% CI, PE) of rds30 ──
x[, c(10, 12, 17:21)] not equivalent to c(18.00203, 25.2277, 80, 125, 79.58062, 108.0607, 92.73371).
Component 1: Mean relative difference: 5.01098051271e-05
Component 5: Mean relative difference: 0.00755326102498
Component 6: Mean relative difference: 0.00761033821495
[ FAIL 4 | WARN 8 | SKIP 4 | PASS 86 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [89s/246s] OK
- checking PDF version of manual ... [13s/33s] OK
- checking HTML version of manual ... [6s/15s] OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR, 1 NOTE