* installing *source* package ‘remstimate’ ...
** package ‘remstimate’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (GCC) 14.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/remstimate/src'
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/remify/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/remify/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c remstimate.cpp -o remstimate.o
remstimate.cpp: In function 'Rcpp::List GDADAMAX(const arma::vec&, const arma::cube&, const arma::field<arma::Col<unsigned int> >&, const arma::field<arma::Col<unsigned int> >&, const arma::field<arma::Col<unsigned int> >&, const Rcpp::List&, const arma::vec&, std::string, bool, bool, bool, bool, Rcpp::Nullable<int>, int, int, double, double, double, double)':
remstimate.cpp:655:28: warning: 'loglik_prev' may be used uninitialized [-Wmaybe-uninitialized]
  655 |     if((i > 1)  & (std::abs(loglik_prev - loglik) < epsilon)){
      |                    ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
remstimate.cpp:635:17: note: 'loglik_prev' was declared here
  635 |   double loglik,loglik_prev;
      |                 ^~~~~~~~~~~
In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:189,
                 from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25,
                 from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo.h:29,
                 from remstimate.cpp:1:
In function 'SEXPREC* Rcpp::internal::primitive_wrap__impl__cast(const T&, Rcpp::traits::false_type) [with T = double]',
    inlined from 'SEXPREC* Rcpp::internal::primitive_wrap__impl(const T&, Rcpp::traits::r_type_primitive_tag) [with T = double]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap.h:465:46,
    inlined from 'SEXPREC* Rcpp::internal::primitive_wrap(const T&) [with T = double]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap.h:489:40,
    inlined from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_primitive_tag) [with T = double]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap.h:744:34,
    inlined from 'SEXPREC* Rcpp::wrap(const T&) [with T = double]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap_end.h:30:38,
    inlined from 'static SEXPREC* Rcpp::internal::generic_element_converter<RTYPE>::get(const T&) [with T = double; int RTYPE = 19]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/converter.h:80:23,
    inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element__dispatch__isArgument(Rcpp::traits::false_type, iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:532:13,
    inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element__dispatch(Rcpp::traits::true_type, iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:525:46,
    inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element(iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:514:34,
    inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object<double>; TArgs = {Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::subview_col<double> >, Rcpp::traits::named_object<arma::subview<double> >, Rcpp::traits::named_object<int>, Rcpp::traits::named_object<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:1168:32,
    inlined from 'static Rcpp::Vector<RTYPE, StoragePolicy> Rcpp::Vector<RTYPE, StoragePolicy>::create__dispatch(Rcpp::traits::true_type, const T& ...) [with T = {Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::subview_col<double> >, Rcpp::traits::named_object<arma::subview<double> >, Rcpp::traits::named_object<int>, Rcpp::traits::named_object<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:1148:37,
    inlined from 'static Rcpp::Vector<RTYPE, StoragePolicy> Rcpp::Vector<RTYPE, StoragePolicy>::create(const T& ...) [with T = {Rcpp::traits::named_object<double>, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::subview_col<double> >, Rcpp::traits::named_object<arma::subview<double> >, Rcpp::traits::named_object<int>, Rcpp::traits::named_object<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:1131:33,
    inlined from 'Rcpp::List GDADAMAX(const arma::vec&, const arma::cube&, const arma::field<arma::Col<unsigned int> >&, const arma::field<arma::Col<unsigned int> >&, const arma::field<arma::Col<unsigned int> >&, const Rcpp::List&, const arma::vec&, std::string, bool, bool, bool, bool, Rcpp::Nullable<int>, int, int, double, double, double, double)' at remstimate.cpp:698:93:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap.h:442:41: warning: 'loglik' may be used uninitialized [-Wmaybe-uninitialized]
  442 |             r_vector_start<RTYPE>(x)[0] = object;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
remstimate.cpp: In function 'Rcpp::List GDADAMAX(const arma::vec&, const arma::cube&, const arma::field<arma::Col<unsigned int> >&, const arma::field<arma::Col<unsigned int> >&, const arma::field<arma::Col<unsigned int> >&, const Rcpp::List&, const arma::vec&, std::string, bool, bool, bool, bool, Rcpp::Nullable<int>, int, int, double, double, double, double)':
remstimate.cpp:635:10: note: 'loglik' was declared here
  635 |   double loglik,loglik_prev;
      |          ^~~~~~
g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o remstimate.so RcppExports.o remstimate.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/remstimate/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/remstimate/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/remstimate/src'
installing to /data/gannet/ripley/R/packages/tests-devel/remstimate.Rcheck/00LOCK-remstimate/00new/remstimate/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (remstimate)