* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/rempsyc.Rcheck’
* using R Under development (unstable) (2025-02-28 r87848)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘rempsyc/DESCRIPTION’ ... OK
* this is package ‘rempsyc’ version ‘0.1.9’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rempsyc’ can be installed ... [11s/13s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/rempsyc-00install.html' for details.
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [18s/22s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘rempsyc-Ex.R’ failed
The error most likely occurred in:
> ### Name: cormatrix_excel
> ### Title: Easy export of correlation matrix to Excel
> ### Aliases: cormatrix_excel
> ### Keywords: Excel correlation matrix
>
> ### ** Examples
>
> ## Don't show:
> if (requireNamespace("correlation", quietly = TRUE) && requireNamespace("openxlsx2", quietly = TRUE)) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ .old_wd <- setwd(tempdir())
+ ## End(Don't show)
+ # Basic example
+ cormatrix_excel(mtcars, select = c("mpg", "cyl", "disp", "hp", "carb"), filename = "cormatrix1")
+ cormatrix_excel(iris, p_adjust = "none", filename = "cormatrix2")
+ cormatrix_excel(airquality, method = "spearman", filename = "cormatrix3")
+ ## Don't show:
+ setwd(.old_wd)
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> .old_wd <- setwd(tempdir())
> cormatrix_excel(mtcars, select = c("mpg", "cyl", "disp", "hp", "carb"),
+ filename = "cormatrix1")
# Correlation Matrix (pearson-method)
Parameter | mpg | cyl | disp | hp | carb
---------------------------------------------------------------
mpg | | -0.85*** | -0.85*** | -0.78*** | -0.55**
cyl | -0.85*** | | 0.90*** | 0.83*** | 0.53**
disp | -0.85*** | 0.90*** | | 0.79*** | 0.39*
hp | -0.78*** | 0.83*** | 0.79*** | | 0.75***
carb | -0.55** | 0.53** | 0.39* | 0.75*** |
p-value adjustment method: none
Error: x must be class wbColour
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [30s/37s] ERROR
Running ‘testthat.R’ [29s/37s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rempsyc)
Suggested APA citation: Thériault, R. (2023). rempsyc: Convenience functions for psychology.
Journal of Open Source Software, 8(87), 5466. https://doi.org/10.21105/joss.05466
>
> test_check("rempsyc")
[ FAIL 1 | WARN 0 | SKIP 19 | PASS 46 ]
â•â• Skipped tests (19) â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•
• On CRAN (19): 'test-best_duplicate.R:8:3', 'test-extract_duplicates.R:8:3',
'test-find_mad.R:2:3', 'test-format_value.R:2:3',
'test-nice_assumptions.R:9:3', 'test-nice_contrasts.R:7:3',
'test-nice_lm.R:5:3', 'test-nice_lm_contrasts.R:12:3',
'test-nice_lm_slopes.R:5:3', 'test-nice_mod.R:4:3', 'test-nice_na.R:2:3',
'test-nice_randomize.R:5:3', 'test-nice_reverse.R:3:3',
'test-nice_slopes.R:4:3', 'test-nice_t_test.R:5:3', 'test-nice_table.R:13:3',
'test-nice_var.R:2:3', 'test-scale_mad.R:2:3', 'test-winsorize_mad.R:2:3'
â•â• Failed tests â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•
── Error ('test-cormatrix_excel.R:5:3'): cormatrix_excel ───────────────────────
Error: x must be class wbColour
Backtrace:
â–†
1. └─testthat::expect_snapshot(...) at test-cormatrix_excel.R:5:3
2. └─rlang::cnd_signal(state$error)
[ FAIL 1 | WARN 0 | SKIP 19 | PASS 46 ]
Error: Test failures
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [249s/341s] OK
* checking PDF version of manual ... [9s/12s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 ERRORs