* installing *source* package ‘redatam’ ...
** this is package ‘redatam’ version ‘2.1.1’
** package ‘redatam’ successfully unpacked and MD5 sums checked
** using staged installation
Please specify at least one package name on the command line.
Please specify at least one package name on the command line.
** libs
using C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/redatam/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c vendor/pugixml.cpp -o vendor/pugixml.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c redatamlib/readers/BitArrayReader.cpp -o redatamlib/readers/BitArrayReader.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c redatamlib/readers/ByteArrayReader.cpp -o redatamlib/readers/ByteArrayReader.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c redatamlib/entities/Entity.cpp -o redatamlib/entities/Entity.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c redatamlib/readers/FuzzyEntityParser.cpp -o redatamlib/readers/FuzzyEntityParser.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c redatamlib/readers/FuzzyVariableParser.cpp -o redatamlib/readers/FuzzyVariableParser.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c redatamlib/exporters/ParentIDCalculator.cpp -o redatamlib/exporters/ParentIDCalculator.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c redatamlib/exporters/RListExporter.cpp -o redatamlib/exporters/RListExporter.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c redatamlib/entities/Variable.cpp -o redatamlib/entities/Variable.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c redatamlib/readers/XMLParser.cpp -o redatamlib/readers/XMLParser.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c redatamlib/utils/utils.cpp -o redatamlib/utils/utils.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c redatamlib/database/RedatamDatabase.cpp -o redatamlib/database/RedatamDatabase.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c main.cpp -o main.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ivendor -Iredatamlib -Iredatamlib/database -Iredatamlib/entities -Iredatamlib/exporters -Iredatamlib/readers -Iredatamlib/utils -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp11.cpp -o cpp11.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o redatam.so vendor/pugixml.o redatamlib/readers/BitArrayReader.o redatamlib/readers/ByteArrayReader.o redatamlib/entities/Entity.o redatamlib/readers/FuzzyEntityParser.o redatamlib/readers/FuzzyVariableParser.o redatamlib/exporters/ParentIDCalculator.o redatamlib/exporters/RListExporter.o redatamlib/entities/Variable.o redatamlib/readers/XMLParser.o redatamlib/utils/utils.o redatamlib/database/RedatamDatabase.o main.o cpp11.o -Lvendor -Lredatamlib
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/redatam/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/redatam/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/redatam/src'
installing to /data/gannet/ripley/R/packages/tests-devel/redatam.Rcheck/00LOCK-redatam/00new/redatam/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (redatam)