Install log for 'rbscCI'

* installing *source* package ‘rbscCI’ ...
** package ‘rbscCI’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (GCC) 14.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/rbscCI/src'
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c binary-search.cpp -o binary-search.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c bsc.cpp -o bsc.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c bscExports.cpp -o bscExports.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c cp.cpp -o cp.o
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/math/special_functions/beta.hpp:1721,
                 from cp.cpp:3:
/data/gannet/ripley/R/test-dev/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp: In instantiation of 'boost::math::detail::temme_root_finder<T>::temme_root_finder(T, T) [with T = long double]':
/data/gannet/ripley/R/test-dev/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7:   required from 'T boost::math::detail::temme_method_2_ibeta_inverse(T, T, T, T, T, const Policy&) [with T = long double; Policy = boost::math::policies::policy<boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]'
  304 |       temme_root_finder<T>(-lu, alpha), x, lower, upper, policies::digits<T, Policy>() / 2);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:48:   required from 'T boost::math::detail::ibeta_inv_imp(T, T, T, T, const Policy&, T*) [with T = long double; Policy = boost::math::policies::policy<boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]'
  615 |                x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol);
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:30:   required from 'boost::math::tools::promote_args_t<T1, T2, T3, T4> boost::math::ibeta_inv(T1, T2, T3, T4*, const Policy&) [with T1 = unsigned int; T2 = unsigned int; T3 = double; T4 = double; Policy = policies::policy<policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t<T1, T2, T3, T4> = double]'
  992 |    rx = detail::ibeta_inv_imp(
      |         ~~~~~~~~~~~~~~~~~~~~~^
  993 |          static_cast<value_type>(a),
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~
  994 |          static_cast<value_type>(b),
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~
  995 |          static_cast<value_type>(p),
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~
  996 |          static_cast<value_type>(1 - p),
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  997 |          forwarding_policy(), &ry);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1015:20:   required from 'boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::ibeta_inv(RT1, RT2, RT3) [with RT1 = unsigned int; RT2 = unsigned int; RT3 = double; tools::promote_args_t<RT1, RT2, A> = double]'
 1015 |    return ibeta_inv(a, b, p, static_cast<result_type*>(nullptr), policies::policy<>());
      |           ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cp.cpp:16:44:   required from here
   16 |       limits_.limits[ k ].lower = ibeta_inv( k, s_N - k + 1, s_alpha / 2.0 );
      |                                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable]
   29 |       const T x_extrema = 1 / (1 + a);
      |               ^~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c cpExports.cpp -o cpExports.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c util.cpp -o util.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c utilExports.cpp -o utilExports.o
g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o rbscCI.so RcppExports.o binary-search.o bsc.o bscExports.o cp.o cpExports.o util.o utilExports.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/rbscCI/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/rbscCI/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/rbscCI/src'
installing to /data/gannet/ripley/R/packages/tests-devel/rbscCI.Rcheck/00LOCK-rbscCI/00new/rbscCI/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rbscCI)