* installing *source* package ‘raybevel’ ...
** this is package ‘raybevel’ version ‘0.2.2’
** package ‘raybevel’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/raybevel/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DCMAKE_OVERRIDDEN_DEFAULT_ENT_BACKEND=BOOST_BACKEND -DCGAL_DISABLE_GMP=1 -DCMAKE_DISABLE_FIND_PACKAGE_GMP=1 -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/progress/include' -I'/data/gannet/ripley/R/test-dev/RcppThread/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:30,
from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp.h:27,
from RcppExports.cpp:5:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/r/check_r_headers.h:27:21: note: ‘#pragma message: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410’
27 | #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: ‘#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410’
35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DCMAKE_OVERRIDDEN_DEFAULT_ENT_BACKEND=BOOST_BACKEND -DCGAL_DISABLE_GMP=1 -DCMAKE_DISABLE_FIND_PACKAGE_GMP=1 -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/progress/include' -I'/data/gannet/ripley/R/test-dev/RcppThread/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c convert_ss_to_polygons_rcpp.cpp -o convert_ss_to_polygons_rcpp.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DCMAKE_OVERRIDDEN_DEFAULT_ENT_BACKEND=BOOST_BACKEND -DCGAL_DISABLE_GMP=1 -DCMAKE_DISABLE_FIND_PACKAGE_GMP=1 -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/progress/include' -I'/data/gannet/ripley/R/test-dev/RcppThread/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c generate_offset_links_nodes_rcpp.cpp -o generate_offset_links_nodes_rcpp.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DCMAKE_OVERRIDDEN_DEFAULT_ENT_BACKEND=BOOST_BACKEND -DCGAL_DISABLE_GMP=1 -DCMAKE_DISABLE_FIND_PACKAGE_GMP=1 -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/progress/include' -I'/data/gannet/ripley/R/test-dev/RcppThread/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c math.cpp -o math.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DCMAKE_OVERRIDDEN_DEFAULT_ENT_BACKEND=BOOST_BACKEND -DCGAL_DISABLE_GMP=1 -DCMAKE_DISABLE_FIND_PACKAGE_GMP=1 -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/progress/include' -I'/data/gannet/ripley/R/test-dev/RcppThread/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rayskeleton.cpp -o rayskeleton.o
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/vector_property_map.hpp:14,
from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/property_map.hpp:598,
from /data/gannet/ripley/R/test-dev/BH/include/boost/graph/properties.hpp:19,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/boost/graph/graph_traits_HalfedgeDS.h:25,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/boost/graph/graph_traits_HalfedgeDS_default.h:15,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/HalfedgeDS_default.h:23,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Straight_skeleton_2.h:18,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/create_straight_skeleton_2.h:18,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/create_straight_skeleton_from_polygon_with_holes_2.h:17,
from rayskeleton.cpp:8:
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/detail/shared_count.hpp:294:33: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
294 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/15/bits/std_thread.h:45,
from /usr/include/c++/15/thread:47,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/config.h:427,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/basic.h:21,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Cartesian/Cartesian_base.h:20,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Simple_cartesian.h:20,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Exact_predicates_inexact_constructions_kernel.h:20,
from rayskeleton.cpp:4:
/usr/include/c++/15/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:354:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
354 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
/usr/include/c++/15/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:365:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
365 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
/usr/include/c++/15/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:423:34: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
423 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
/usr/include/c++/15/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:430:34: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
430 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
/usr/include/c++/15/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:432:38: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
432 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
/usr/include/c++/15/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o raybevel.so RcppExports.o convert_ss_to_polygons_rcpp.o generate_offset_links_nodes_rcpp.o math.o rayskeleton.o -latomic -lpthread
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/raybevel/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/raybevel/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/raybevel/src'
installing to /data/gannet/ripley/R/packages/tests-devel/raybevel.Rcheck/00LOCK-raybevel/00new/raybevel/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (raybevel)