• using R Under development (unstable) (2024-11-15 r87338)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (GCC) 14.2.0     GNU Fortran (GCC) 14.2.0
• running under: Fedora Linux 36 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘rareNMtests/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘rareNMtests’ version ‘1.2’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘rareNMtests’ can be installed ... [12s/15s] OK See the install log for details.
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [19s/23s] OK
• checking Rd files ... NOTE checkRd: (-1) BiogTest.individual.Rd:25: Lost braces     25 | \item{powerfun}{ By default rarefied richness is estimated for all subsample sizes, from 1 to \emph{n}, where \emph{n} is the total number of individuals in the sample. If \code{powerfun} is less than 1, it decreases the total number of subsamples as a power function of \{h{n}. }        | ^ checkRd: (-1) BiogTest.individual.Rd:66: Lost braces     66 | Chao, A., Gotelli, N.J., Hsieh, T.C., Sander, E.L., Ma, K.H., Colwell, R.K. & Ellison, A.M. (2014). Rarefaction and extrapolation with Hill numbers: a framework for sampling and estimation in species diversity studies. emph{Ecological Monographs} 84: 45-67.        | ^ checkRd: (-1) BiogTest.individual.Rd:68: Lost braces     68 | Limpert, E., Stahel, W.A. & Abbt, M. (2001). Log-normal distributions across the sciences: keys and clues. emph{BioScience} 51: 341-352.        | ^ checkRd: (-1) BiogTest.individual.Rd:70: Lost braces     70 | O'Hara, R.B. (2005). Species richness estimators: how many species can dance on the head of a pin? emph{Journal of Animal Ecology} 74: 375-386.        | ^ checkRd: (-1) EcoTest.individual.Rd:57: Lost braces     57 | Chao, A., Gotelli, N.J., Hsieh, T.C., Sander, E.L., Ma, K.H., Colwell, R.K. & Ellison, A.M. (2014). Rarefaction and extrapolation with Hill numbers: a framework for sampling and estimation in species diversity studies. emph{Ecological Monographs} 84: 45-67.        | ^ checkRd: (-1) rarefaction.individual.Rd:37: Lost braces     37 | Chao, A., Gotelli, N.J., Hsieh, T.C., Sander, E.L., Ma, K.H., Colwell, R.K. & Ellison, A.M. (2014). Rarefaction and extrapolation with Hill numbers: a framework for sampling and estimation in species diversity studies. emph{Ecological Monographs} 84: 45-67.        | ^ checkRd: (-1) rarefaction.individual.Rd:39: Lost braces     39 | Chao, A. & Jost, J. (2012). Coverage-based rarefaction and extrapolation: standardizing samples by completeness rather than size. emph{Ecology} 93: 2533-2547.        | ^ checkRd: (-1) rarefaction.individual.Rd:41: Lost braces     41 | Hill, M.O. (1973). Diversity and evenness: a unifying notation and its consequences. emph{Ecology} 54: 427-432.        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... OK
• checking PDF version of manual ... [7s/11s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 NOTE