* installing *source* package ‘pcaL1’ ...
** package ‘pcaL1’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc-14
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc-14 accepts -g... yes
checking for gcc-14 option to enable C11 features... none needed
checking how to run the C preprocessor... gcc-14 -E
checking for pkg-config... /usr/bin/pkg-config
configure: set compile and link flags according to pkg-config
configure: compile flags are -I/usr/include/coin
configure: link flags are -lClpSolver -lClp -lCoinUtils
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for stdbool.h... yes
checking for Clp_C_Interface.h... yes
checking for library containing Clp_newModel... none required
checking for library containing Clp_setRowName... none required
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc-14 (GCC) 14.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/pcaL1/src'
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o
In file included from type.h:11,
from init.c:1:
/usr/include/coin/Clp_C_Interface.h:77:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
77 | COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new();
| ^~~~~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c l1pca.c -o l1pca.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c l1pca_R.c -o l1pca_R.o
In file included from type.h:11,
from l1pca.c:1:
/usr/include/coin/Clp_C_Interface.h:77:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
77 | COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new();
| ^~~~~~~~~~
In file included from type.h:11,
from l1pca_R.c:1:
/usr/include/coin/Clp_C_Interface.h:77:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
77 | COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new();
| ^~~~~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c l1pcahp.c -o l1pcahp.o
In file included from type.h:11,
from l1pcahp.c:1:
/usr/include/coin/Clp_C_Interface.h:77:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
77 | COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new();
| ^~~~~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c l1pcahp_R.c -o l1pcahp_R.o
In file included from type.h:11,
from l1pcahp_R.c:1:
/usr/include/coin/Clp_C_Interface.h:77:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
77 | COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new();
| ^~~~~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c l1pcastar.c -o l1pcastar.o
In file included from type.h:11,
from l1pcastar.c:1:
/usr/include/coin/Clp_C_Interface.h:77:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
77 | COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new();
| ^~~~~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c l1pcastar_R.c -o l1pcastar_R.o
In file included from type.h:11,
from l1pcastar_R.c:1:
/usr/include/coin/Clp_C_Interface.h:77:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
77 | COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new();
| ^~~~~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c l1projection.c -o l1projection.o
In file included from type.h:11,
from l1projection.c:1:
/usr/include/coin/Clp_C_Interface.h:77:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
77 | COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new();
| ^~~~~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c l1projection_R.c -o l1projection_R.o
In file included from type.h:11,
from l1projection_R.c:1:
/usr/include/coin/Clp_C_Interface.h:77:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
77 | COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new();
| ^~~~~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c pcal1.c -o pcal1.o
In file included from type.h:11,
from pcal1.c:1:
/usr/include/coin/Clp_C_Interface.h:77:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
77 | COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new();
| ^~~~~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c pcal1_R.c -o pcal1_R.o
In file included from type.h:11,
from pcal1_R.c:1:
/usr/include/coin/Clp_C_Interface.h:77:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
77 | COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new();
| ^~~~~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c pcalp.c -o pcalp.o
In file included from type.h:11,
from pcalp.c:1:
/usr/include/coin/Clp_C_Interface.h:77:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
77 | COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new();
| ^~~~~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c pcalp_R.c -o pcalp_R.o
In file included from type.h:11,
from pcalp_R.c:1:
/usr/include/coin/Clp_C_Interface.h:77:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
77 | COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new();
| ^~~~~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sharpel1pca.c -o sharpel1pca.o
In file included from type.h:11,
from sharpel1pca.c:1:
/usr/include/coin/Clp_C_Interface.h:77:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
77 | COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new();
| ^~~~~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sharpel1pca_R.c -o sharpel1pca_R.o
In file included from type.h:11,
from sharpel1pca_R.c:1:
/usr/include/coin/Clp_C_Interface.h:77:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
77 | COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new();
| ^~~~~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sharpel1rs.c -o sharpel1rs.o
In file included from type.h:11,
from sharpel1rs.c:1:
/usr/include/coin/Clp_C_Interface.h:77:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
77 | COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new();
| ^~~~~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sharpel1rs_R.c -o sharpel1rs_R.o
In file included from type.h:11,
from sharpel1rs_R.c:1:
/usr/include/coin/Clp_C_Interface.h:77:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
77 | COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new();
| ^~~~~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsel1pca.c -o sparsel1pca.o
In file included from type.h:11,
from sparsel1pca.c:4:
/usr/include/coin/Clp_C_Interface.h:77:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
77 | COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new();
| ^~~~~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsel1pca_R.c -o sparsel1pca_R.o
In file included from type.h:11,
from sparsel1pca_R.c:1:
/usr/include/coin/Clp_C_Interface.h:77:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
77 | COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new();
| ^~~~~~~~~~
sparsel1pca_R.c: In function 'sparsel1pca':
sparsel1pca_R.c:13:15: warning: variable 'solverinfo' set but not used [-Wunused-but-set-variable]
13 | SOLVERINFO solverinfo;
| ^~~~~~~~~~
gcc-14 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o pcaL1.so init.o l1pca.o l1pca_R.o l1pcahp.o l1pcahp_R.o l1pcastar.o l1pcastar_R.o l1projection.o l1projection_R.o pcal1.o pcal1_R.o pcalp.o pcalp_R.o sharpel1pca.o sharpel1pca_R.o sharpel1rs.o sharpel1rs_R.o sparsel1pca.o sparsel1pca_R.o -lClpSolver -lClp -lCoinUtils -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/pcaL1/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/pcaL1/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/pcaL1/src'
installing to /data/gannet/ripley/R/packages/tests-devel/pcaL1.Rcheck/00LOCK-pcaL1/00new/pcaL1/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pcaL1)