• using R Under development (unstable) (2025-02-15 r87726)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)     GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
• running under: Fedora Linux 40 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘pbdMPI/DESCRIPTION’ ... OK
• this is package ‘pbdMPI’ version ‘0.5-2’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘pbdMPI’ can be installed ... [29s/79s] OK See the install log for details.
• used C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... NOTE   possible bashism in configure.ac line 73 (test -a/-o):   if test -n "${MPI_INCLUDE_PATH}" -a -z "${MPI_LIBPATH}" ; then   possible bashism in configure.ac line 76 (test -a/-o):   if test -z "${MPI_INCLUDE_PATH}" -a -n "${MPI_LIBPATH}" ; then   possible bashism in configure.ac line 111 (test -a/-o):     if test "$MPITYPE" = "UNKNOWN" -o "$MPITYPE" = "OPENMPI" ; then   possible bashism in configure.ac line 115 (test -a/-o):       if test "$SED" != "F" -a "$MPICC" != "F" -a "$OMPI_INFO" != "F" ; then   possible bashism in configure.ac line 154 (test -a/-o):         if test "${TMP_INC}" != "F" -a "${TMP_LIB}" != "F" ; then   possible bashism in configure.ac line 169 (test -a/-o):       if test "$TMP_INC" = "F" -o "$TMP_LIB" = "F" ; then   possible bashism in configure.ac line 214 (test -a/-o):             if test "${TMP_INC}" != "F" -a "${TMP_LIB}" != "F" ; then   possible bashism in configure.ac line 239 (test -a/-o):     if test "$MPITYPE" = "UNKNOWN" -o "$MPITYPE" = "IBMMPI" ; then   possible bashism in configure.ac line 243 (test -a/-o):       if test "$SED" != "F" -a "$MPICC" != "F" -a "$OMPI_INFO" != "F" ; then   possible bashism in configure.ac line 275 (test -a/-o):         if test "${TMP_INC}" != "F" -a "${TMP_LIB}" != "F" ; then   possible bashism in configure.ac line 297 (test -a/-o):     if test "$MPITYPE" = "MPICH2" -o "$MPITYPE" = "MPICH" -o "$MPITYPE" = "MPICH3" ; then   possible bashism in configure.ac line 301 (test -a/-o):       if test "$SED" != "F" -a "$MPICC" != "F" ; then   possible bashism in configure.ac line 353 (test -a/-o):         if test "${TMP_INC}" != "F" -a "${TMP_LIB}" != "F" ; then   possible bashism in configure.ac line 368 (test -a/-o):       if test "$TMP_INC" = "F" -o "$TMP_LIB" = "F" ; then   possible bashism in configure.ac line 413 (test -a/-o):             if test "${TMP_INC}" != "F" -a "${TMP_LIB}" != "F" ; then   possible bashism in configure.ac line 779 (test -a/-o):   if test "$MPITYPE" = "OPENMPI" -o "$MPITYPE" = "IBMMPI" -o "$MPITYPE" = "LAM" -o "$MPITYPE" = "MPICH2" -o "$MPITYPE" = "MPICH3" -o "$MPITYPE" = "INTELMPI" ; then   possible bashism in configure.ac line 837 (test -a/-o):   if test "X$MPIRUN" = "X" -o "X$MPIEXEC" = "X" -o "X$ORTERUN" = "X" ; then   possible bashism in configure.ac line 842 (test -a/-o):     if test "$MPITYPE" = "MPICH" -o "$MPITYPE" = "MPICH2" -o "$MPITYPE" = "MPICH3" -o "$MPITYPE" = "MPICH3" ; then   possible bashism in configure.ac line 846 ($"foo" should be eval_gettext "foo"):     if test $"X$TMP_MODULE" != "X" ; then
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... WARNING ---- unloading [gannet:437021:0:437021] Caught signal 11 (Segmentation fault: address not mapped to object at address 0x7f12364bc960)
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [32s/93s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in shell scripts ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [13s/104s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [27s/75s] OK
• checking PDF version of manual ... [13s/37s] OK
• checking HTML version of manual ... [6s/15s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 WARNING, 1 NOTE