• using R Under development (unstable) (2025-02-15 r87723)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)     GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
• running under: Fedora Linux 40 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘partR2/DESCRIPTION’ ... OK
• this is package ‘partR2’ version ‘0.9.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘partR2’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘methods’   All declared Imports should be used.
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [8s/14s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [16s/21s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [44s/54s] ERROR   Running ‘testthat.R’ [44s/54s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(partR2)   > test_check("partR2")   [ FAIL 11 | WARN 141 | SKIP 0 | PASS 81 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test_combinations.R:63:3'): partbatch without partvars works ──────   R2_BMc$R2$estimate not equal to c(0.600551, 0.3910285).   2/2 mismatches (average diff: 0.0345)   [1] 0.559 - 0.601 == -0.0420   [2] 0.364 - 0.391 == -0.0269   ── Failure ('test_partR2.R:22:3'): partR2 works for some special cases ─────────   r2_1$R2$estimate not equal to c(0.599, 0.0125, 0, 0.0124).   3/4 mismatches (average diff: 0.0146)   [1] 0.5573 - 0.5990 == -0.04172   [2] 0.0114 - 0.0125 == -0.00115   [4] 0.0113 - 0.0124 == -0.00107   ── Failure ('test_r2.R:25:3'): R2 marginal and conditional are correct ─────────   r2_marg$R2 not equal to 0.2.   1/1 mismatches   [1] 0.164 - 0.2 == -0.0362   ── Failure ('test_r2.R:26:3'): R2 marginal and conditional are correct ─────────   r2_cond$R2 not equal to 0.229.   1/1 mismatches   [1] 0.406 - 0.229 == 0.177   ── Failure ('test_r2.R:123:3'): part R2s are correct with part_R2s() ───────────   r2_6$estimate not equal to c(0.219, 0.02).   2/2 mismatches (average diff: 0.0202)   [1] 0.1814 - 0.219 == -0.03761   [2] 0.0172 - 0.020 == -0.00282   ── Failure ('test_r2.R:131:3'): part R2s are correct with part_R2s() ───────────   r2_8[r2_8$term == "Year+SpeciesDiversity:I(Temperature^2)", "estimate"][[1]] not equal to 0.0210613.   1/1 mismatches   [1] 0.0177 - 0.0211 == -0.00336   ── Failure ('test_varcomps.R:88:3'): Gaussian variance components are correct ──   var_comps1$var_ran not equal to 0.2272901.   1/1 mismatches   [1] 0.306 - 0.227 == 0.0785   ── Failure ('test_varcomps.R:89:3'): Gaussian variance components are correct ──   var_comps1$var_res not equal to 0.7646179.   1/1 mismatches   [1] 0.749 - 0.765 == -0.016   ── Failure ('test_varcomps.R:92:3'): Gaussian variance components are correct ──   var_comps2$var_fix not equal to 0.4129966.   1/1 mismatches   [1] 0.414 - 0.413 == 0.00124   ── Failure ('test_varcomps.R:93:3'): Gaussian variance components are correct ──   var_comps2$var_ran not equal to 0.2048629.   1/1 mismatches   [1] 0.156 - 0.205 == -0.0487   ── Failure ('test_varcomps.R:94:3'): Gaussian variance components are correct ──   var_comps2$var_res not equal to 0.3723833.   1/1 mismatches   [1] 0.382 - 0.372 == 0.00999      [ FAIL 11 | WARN 141 | SKIP 0 | PASS 81 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [155s/197s] OK
• checking PDF version of manual ... [10s/13s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR, 1 NOTE