* installing *source* package ‘nuggets’ ...
** this is package ‘nuggets’ version ‘1.4.0’
** package ‘nuggets’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (GCC) 14.2.0’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/nuggets/src'
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c dig.cpp -o dig.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c triangle.cpp -o triangle.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c raisedcos.cpp -o raisedcos.o
In file included from dig/Executor.h:4,
                 from dig.cpp:1:
./dig/Digger.h: In instantiation of 'bool Digger<DATA>::isStorageFull() [with DATA = Data<BitChain, SimdVectorNumChain<GOEDEL> >]':
./dig/Digger.h:58:26:   required from 'void Digger<DATA>::run() [with DATA = Data<BitChain, SimdVectorNumChain<GOEDEL> >]'
   58 |                     if (!isStorageFull()) {
      |                          ^~~~~~~~~~~~~
dig/Executor.h:142:23:   required from 'Rcpp::List Executor<BITCHAIN, NUMCHAIN>::execute(Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List) [with BITCHAIN = BitChain; NUMCHAIN = SimdVectorNumChain<GOEDEL>; Rcpp::List = Rcpp::Vector<19>]'
  142 |             digger.run();
      |             ~~~~~~~~~~^~
dig.cpp:27:30:   required from here
   27 |         result = exec.execute(logData, numData, logFoci, numFoci);
      |                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./dig/Digger.h:245:30: warning: comparison of integer expressions of different signedness: 'std::vector<std::vector<ArgumentValue> >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  245 |         return result.size() >= config.getMaxResults();
      |                ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
./dig/Digger.h: In instantiation of 'bool Digger<DATA>::isStorageFull() [with DATA = Data<BitChain, SimdVectorNumChain<GOGUEN> >]':
./dig/Digger.h:58:26:   required from 'void Digger<DATA>::run() [with DATA = Data<BitChain, SimdVectorNumChain<GOGUEN> >]'
   58 |                     if (!isStorageFull()) {
      |                          ^~~~~~~~~~~~~
dig/Executor.h:142:23:   required from 'Rcpp::List Executor<BITCHAIN, NUMCHAIN>::execute(Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List) [with BITCHAIN = BitChain; NUMCHAIN = SimdVectorNumChain<GOGUEN>; Rcpp::List = Rcpp::Vector<19>]'
  142 |             digger.run();
      |             ~~~~~~~~~~^~
dig.cpp:31:30:   required from here
   31 |         result = exec.execute(logData, numData, logFoci, numFoci);
      |                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./dig/Digger.h:245:30: warning: comparison of integer expressions of different signedness: 'std::vector<std::vector<ArgumentValue> >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  245 |         return result.size() >= config.getMaxResults();
      |                ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
./dig/Digger.h: In instantiation of 'bool Digger<DATA>::isStorageFull() [with DATA = Data<BitChain, SimdVectorNumChain<LUKASIEWICZ> >]':
./dig/Digger.h:58:26:   required from 'void Digger<DATA>::run() [with DATA = Data<BitChain, SimdVectorNumChain<LUKASIEWICZ> >]'
   58 |                     if (!isStorageFull()) {
      |                          ^~~~~~~~~~~~~
dig/Executor.h:142:23:   required from 'Rcpp::List Executor<BITCHAIN, NUMCHAIN>::execute(Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List) [with BITCHAIN = BitChain; NUMCHAIN = SimdVectorNumChain<LUKASIEWICZ>; Rcpp::List = Rcpp::Vector<19>]'
  142 |             digger.run();
      |             ~~~~~~~~~~^~
dig.cpp:35:30:   required from here
   35 |         result = exec.execute(logData, numData, logFoci, numFoci);
      |                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./dig/Digger.h:245:30: warning: comparison of integer expressions of different signedness: 'std::vector<std::vector<ArgumentValue> >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  245 |         return result.size() >= config.getMaxResults();
      |                ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c which_antichain.cpp -o which_antichain.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c test-runner.cpp -o test-runner.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c test-antichain-Condition.cpp -o test-antichain-Condition.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c test-antichain-Node.cpp -o test-antichain-Node.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c test-antichain-Tree.cpp -o test-antichain-Tree.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c test-dig-Bitset.cpp -o test-dig-Bitset.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c test-dig-BitChain.cpp -o test-dig-BitChain.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c test-dig-DualChain.cpp -o test-dig-DualChain.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c test-dig-Iterator.cpp -o test-dig-Iterator.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c test-dig-SparseBitChain.cpp -o test-dig-SparseBitChain.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c test-dig-Task.cpp -o test-dig-Task.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c test-dig-TaskSequence.cpp -o test-dig-TaskSequence.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c test-dig-VectorNumChain.cpp -o test-dig-VectorNumChain.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c dig/SimdVectorNumChain.cpp -o dig/SimdVectorNumChain.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c dig/VectorNumChain.cpp -o dig/VectorNumChain.o
g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o nuggets.so RcppExports.o dig.o triangle.o raisedcos.o which_antichain.o test-runner.o test-antichain-Condition.o test-antichain-Node.o test-antichain-Tree.o test-dig-Bitset.o test-dig-BitChain.o test-dig-DualChain.o test-dig-Iterator.o test-dig-SparseBitChain.o test-dig-Task.o test-dig-TaskSequence.o test-dig-VectorNumChain.o dig/SimdVectorNumChain.o dig/VectorNumChain.o -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/nuggets/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/nuggets/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/nuggets/src'
installing to /data/gannet/ripley/R/packages/tests-devel/nuggets.Rcheck/00LOCK-nuggets/00new/nuggets/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nuggets)