Install log for 'mvMAPIT'

* installing *source* package ‘mvMAPIT’ ...
** package ‘mvMAPIT’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (GCC) 14.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/mvMAPIT/src'
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppSpdlog/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c MAPIT.cpp -o MAPIT.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppSpdlog/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppSpdlog/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c gsm/gsm.cpp -o gsm/gsm.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppSpdlog/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c logging/log.cpp -o logging/log.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppSpdlog/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c mapit/davies.cpp -o mapit/davies.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppSpdlog/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c mapit/normal.cpp -o mapit/normal.o
mapit/davies.cpp: In function 'arma::mat davies_routine(const arma::mat&, const arma::mat&, const arma::mat&, const std::vector<arma::Mat<double> >&)':
mapit/davies.cpp:16:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
   16 |   for (int i = 0; i < q.n_cols; i++) {
      |                   ~~^~~~~~~~~~
mapit/davies.cpp: In function 'arma::vec davies_routine_vec(const arma::mat&, const arma::mat&, const arma::vec&, const std::vector<arma::Mat<double> >&)':
mapit/davies.cpp:36:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
   36 |   for (int i = 0; i < q_sub.n_elem; i++) {
      |                   ~~^~~~~~~~~~~~~~
logging/log.cpp: In function 'std::string phenotype_vector_to_string(const std::vector<arma::Col<double> >&)':
logging/log.cpp:6:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<arma::Col<double> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
    6 |   for (int i = 1; i < v.size(); i++) {
      |                   ~~^~~~~~~~~~
logging/log.cpp: In function 'std::string vector_to_string(const arma::vec&)':
logging/log.cpp:15:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
   15 |   for (int i = 1; i < v.n_elem; i++) {
      |                   ~~^~~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppSpdlog/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c mapit/projection.cpp -o mapit/projection.o
mapit/normal.cpp: In function 'arma::mat normal_pvalues(const arma::mat&, const arma::mat&)':
mapit/normal.cpp:23:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
   23 |   for (int j = 0; j < variance_estimate.n_cols; j++) {
      |                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
mapit/normal.cpp:24:23: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
   24 |     for (int i = 0; i < variance_estimate.n_rows; i++) {
      |                     ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppSpdlog/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c mapit/pve.cpp -o mapit/pve.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppSpdlog/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c mapit/util.cpp -o mapit/util.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppSpdlog/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c mqs/mqs.cpp -o mqs/mqs.o
mapit/util.cpp: In function 'arma::vec remove_first_element(const arma::vec&)':
mapit/util.cpp:17:21: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'long long unsigned int'} [-Wsign-compare]
   17 |   for (int i = 1; i < vector.size(); i++) {
      |                   ~~^~~~~~~~~~~~~~~
mapit/util.cpp: In function 'std::vector<arma::Col<double> > matrix_to_vector_of_rows(const arma::mat&)':
mapit/util.cpp:37:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
   37 |   for (int i = 0; i < matrix.n_rows; ++i) {
      |                   ~~^~~~~~~~~~~~~~~
mqs/mqs.cpp: In function 'arma::mat compute_h_matrix(const arma::mat&, const std::vector<arma::Mat<double> >&)':
mqs/mqs.cpp:113:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<arma::Mat<double> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  113 |   for (int i = 0; i < matrices.size(); i++) {
      |                   ~~^~~~~~~~~~~~~~~~~
mqs/mqs.cpp: In function 'arma::mat compute_v_matrix(const arma::vec&, const std::vector<arma::Mat<double> >&)':
mqs/mqs.cpp:129:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<arma::Mat<double> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  129 |   for (int i = 0; i < matrices.size(); i++) {
      |                   ~~^~~~~~~~~~~~~~~~~
mqs/mqs.cpp: In function 'arma::vec compute_variance_delta(const std::vector<arma::Col<double> >&, const arma::mat&, const arma::mat&, const std::vector<arma::Mat<double> >&)':
mqs/mqs.cpp:171:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  171 |   for (int k = 0; k < delta.n_cols; k++) {
      |                   ~~^~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppSpdlog/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c tests/test-compare-to-original-mapit.cpp -o tests/test-compare-to-original-mapit.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppSpdlog/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c tests/test-davies.cpp -o tests/test-davies.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppSpdlog/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c tests/test-gsm.cpp -o tests/test-gsm.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppSpdlog/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c tests/test-log.cpp -o tests/test-log.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppSpdlog/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c tests/test-mqs.cpp -o tests/test-mqs.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppSpdlog/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c tests/test-normal.cpp -o tests/test-normal.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppSpdlog/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c tests/test-projection.cpp -o tests/test-projection.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppSpdlog/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c tests/test-pve.cpp -o tests/test-pve.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppSpdlog/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c tests/test-runner.cpp -o tests/test-runner.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I. -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppSpdlog/include' -I'/data/gannet/ripley/R/test-dev/testthat/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c tests/test-util.cpp -o tests/test-util.o
g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o mvMAPIT.so MAPIT.o RcppExports.o gsm/gsm.o logging/log.o mapit/davies.o mapit/normal.o mapit/projection.o mapit/pve.o mapit/util.o mqs/mqs.o tests/test-compare-to-original-mapit.o tests/test-davies.o tests/test-gsm.o tests/test-log.o tests/test-mqs.o tests/test-normal.o tests/test-projection.o tests/test-pve.o tests/test-runner.o tests/test-util.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/mvMAPIT/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/mvMAPIT/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/mvMAPIT/src'
installing to /data/gannet/ripley/R/packages/tests-devel/mvMAPIT.Rcheck/00LOCK-mvMAPIT/00new/mvMAPIT/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mvMAPIT)