* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/multcomp.Rcheck’
* using R Under development (unstable) (2025-02-28 r87848)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘multcomp/DESCRIPTION’ ... OK
* this is package ‘multcomp’ version ‘1.4-28’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘multcomp’ can be installed ... [15s/39s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/multcomp-00install.html' for details.
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [27s/65s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [31s/83s] OK
* checking differences from ‘multcomp-Ex.Rout’ to ‘multcomp-Ex.Rout.save’ ... NOTE
1585,1588d1584
< Warning in optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
<   convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
< Warning in checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv,  :
<   Model failed to converge with max|grad| = 1.60567 (tol = 0.002, component 1)
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [35s/103s] NOTE
  Running ‘bugfix.R’ [5s/15s]
  Comparing ‘bugfix.Rout’ to ‘bugfix.Rout.save’ ... OK
  Running ‘regtest-Tukey.R’
  Comparing ‘regtest-Tukey.Rout’ to ‘regtest-Tukey.Rout.save’ ... OK
  Running ‘regtest-anova.R’
  Comparing ‘regtest-anova.Rout’ to ‘regtest-anova.Rout.save’ ... OK
  Running ‘regtest-fixest.R’ [4s/12s]
  Running ‘regtest-interface-extended.R’
  Comparing ‘regtest-interface-extended.Rout’ to ‘regtest-interface-extended.Rout.save’ ... OK
  Running ‘regtest-interface.R’ [4s/15s]
  Comparing ‘regtest-interface.Rout’ to ‘regtest-interface.Rout.save’ ... OK
  Running ‘regtest-lme.R’ [5s/15s]
  Comparing ‘regtest-lme.Rout’ to ‘regtest-lme.Rout.save’ ...59c59
< 1 53.53  3  1.416e-11
---
> 1 67.07  3  1.812e-14
67,71d66
< Warning messages:
< 1: In optwrap(optimizer, devfun, getStart(start, rho$pp), lower = rho$lower,  :
<   convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera).
< 2: In checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv,  :
<   Model failed to converge with max|grad| = 1.60567 (tol = 0.002, component 1)
  Running ‘regtest-mmm.R’ [3s/12s]
  Comparing ‘regtest-mmm.Rout’ to ‘regtest-mmm.Rout.save’ ... OK
  Running ‘regtest-survival.R’
  Comparing ‘regtest-survival.Rout’ to ‘regtest-survival.Rout.save’ ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [78s/262s] OK
* checking PDF version of manual ... [9s/21s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 NOTEs