- using R Under development (unstable) (2024-06-28 r86849)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (GCC) 14.1.0
GNU Fortran (GCC) 14.1.0
- running under: Fedora Linux 36 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘mlr3viz/DESCRIPTION’ ... OK
- this is package ‘mlr3viz’ version ‘0.8.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘mlr3viz’ can be installed ... [10s/17s] OK
See the install log for details.
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking whether startup messages can be suppressed ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [14s/29s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [47s/94s] ERROR
Running examples in ‘mlr3viz-Ex.R’ failed
The error most likely occurred in:
> ### Name: autoplot.TuningInstanceSingleCrit
> ### Title: Plots for Tuning Instances
> ### Aliases: autoplot.TuningInstanceSingleCrit
>
> ### ** Examples
>
> if (requireNamespace("mlr3tuning") && requireNamespace("patchwork")) {
+ library(mlr3tuning)
+
+ learner = lrn("classif.rpart")
+ learner$param_set$values$cp = to_tune(0.001, 0.1)
+ learner$param_set$values$minsplit = to_tune(1, 10)
+
+ instance = TuningInstanceSingleCrit$new(
+ task = tsk("iris"),
+ learner = learner,
+ resampling = rsmp("holdout"),
+ measure = msr("classif.ce"),
+ terminator = trm("evals", n_evals = 10))
+
+ tuner = tnr("random_search")
+
+ tuner$optimize(instance)
+
+ # plot performance versus batch number
+ autoplot(instance, type = "performance")
+
+ # plot cp values versus performance
+ autoplot(instance, type = "marginal", cols_x = "cp")
+
+ # plot transformed parameter values versus batch number
+ autoplot(instance, type = "parameter", trafo = TRUE)
+
+ # plot parallel coordinates plot
+ autoplot(instance, type = "parallel")
+
+ # plot pairs
+ autoplot(instance, type = "pairs")
+ }
Loading required namespace: mlr3tuning
Loading required package: mlr3
Loading required package: paradox
OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Error in .__TunerRandomSearch__initialize(self = self, private = private, :
object 'OptimizerRandomSearch' not found
Calls: tnr ... .__TunerFromOptimizer__initialize -> assert_optimizer -> assert_r6 -> checkR6
Execution halted
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [90s/61s] ERROR
Running ‘testthat.R’ [90s/60s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("testthat")
+ library("mlr3viz")
+ test_check("mlr3viz")
+ }
Starting 2 test processes
[ FAIL 1 | WARN 0 | SKIP 26 | PASS 86 ]
══ Skipped tests (26) ══════════════════════════════════════════════════════════
• On CRAN (26): 'test_Filter.R:10:3', 'test_LearnerClassif.R:8:3',
'test_LearnerClassif.R:18:3', 'test_BenchmarkResult.R:20:3',
'test_BenchmarkResult.R:49:3', 'test_LearnerClassifCVGlmnet.R:13:3',
'test_LearnerClassifRpart.R:10:3', 'test_LearnerClasssifGlmnet.R:13:3',
'test_LearnerClustHierarchical.R:7:3', 'test_LearnerRegr.R:8:3',
'test_LearnerRegr.R:18:3', 'test_LearnerRegr.R:28:3',
'test_LearnerRegrGlmnet.R:12:3', 'test_LearnerRegrCVGlmnet.R:13:3',
'test_LearnerRegrRpart.R:10:3', 'test_PredictionClassif.R:11:3',
'test_OptimInstanceSingleCrit.R:47:7', 'test_PredictionRegr.R:10:3',
'test_PredictionClust.R:8:3', 'test_TaskClassif.R:8:3',
'test_TaskClust.R:10:3', 'test_TaskRegr.R:8:3',
'test_plot_learner_prediction.R:10:3', 'test_plot_learner_prediction.R:43:3',
'test_plot_learner_prediction.R:53:3', 'test_ResampleResult.R:21:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_TuningInstanceSingleCrit.R:23:1'): (code run outside of `test_that()`) ──
Error in `.__TunerRandomSearch__initialize(self = self, private = private,
super = super)`: object 'OptimizerRandomSearch' not found
Backtrace:
▆
1. └─mlr3tuning::tnr("random_search", batch_size = 10) at test_TuningInstanceSingleCrit.R:23:1
2. └─mlr3misc::dictionary_sugar_get(mlr_tuners, .key, ...)
3. ├─checkmate::assert_r6(dictionary_initialize_item(.key, obj, dots[ii]))
4. │ └─checkmate::checkR6(...)
5. └─mlr3misc:::dictionary_initialize_item(.key, obj, dots[ii])
6. ├─base::do.call(constructor$new, cargs)
7. └─R6 (local) `<fn>`()
8. └─mlr3tuning (local) initialize(...)
9. └─mlr3tuning:::.__TunerRandomSearch__initialize(...)
10. └─super$initialize(optimizer = OptimizerRandomSearch$new(), man = "mlr3tuning::mlr_tuners_random_search")
11. └─mlr3tuning:::.__TunerFromOptimizer__initialize(...)
12. └─bbotk::assert_optimizer(optimizer)
13. └─checkmate::assert_r6(optimizer, "Optimizer")
14. └─checkmate::checkR6(...)
[ FAIL 1 | WARN 0 | SKIP 26 | PASS 86 ]
Deleting unused snapshots:
• BenchmarkResult/bmr-prc.svg
• BenchmarkResult/bmr-roc.svg
• Filter/filter-2.svg
• LearnerClustHierarchical/learner-clust-agnes.svg
• LearnerClustHierarchical/learner-clust-hclust.svg
• OptimInstanceSingleCrit/tisc-marginal-02.svg
• OptimInstanceSingleCrit/tisc-marginal-trafo-01.svg
• OptimInstanceSingleCrit/tisc-marginal-trafo-02.svg
• OptimInstanceSingleCrit/tisc-marginal-x-domain-01.svg
• OptimInstanceSingleCrit/tisc-parallel.svg
• OptimInstanceSingleCrit/tisc-parameter-01.svg
• OptimInstanceSingleCrit/tisc-parameter-02.svg
• OptimInstanceSingleCrit/tisc-parameter-return-list-01.svg
• OptimInstanceSingleCrit/tisc-parameter-return-list-02.svg
• OptimInstanceSingleCrit/tisc-parameter-trafo-01.svg
• OptimInstanceSingleCrit/tisc-parameter-trafo-02.svg
• OptimInstanceSingleCrit/tisc-parameter-x-domain-01.svg
• OptimInstanceSingleCrit/tisc-performance.svg
• OptimInstanceSingleCrit/tisc-points.svg
• OptimInstanceSingleCrit/tisc-surface-grid-50.svg
• OptimInstanceSingleCrit/tisc-surface-regr-lm.svg
• OptimInstanceSingleCrit/tisc-surface.svg
• PredictionClassif/predictionclassif-prc.svg
• PredictionClassif/predictionclassif-roc.svg
• PredictionClassif/predictionclassif-threshold.svg
• PredictionClust/predictionclust-pca.svg
• PredictionClust/predictionclust-scatter.svg
• PredictionClust/predictionclust-sil.svg
• PredictionRegr/predictionregr-confidence.svg
• PredictionRegr/predictionregr-histogram.svg
• PredictionRegr/predictionregr-residual.svg
• ResampleResult/resampleresult-histogram.svg
• ResampleResult/resampleresult-prc.svg
• ResampleResult/resampleresult-roc.svg
• TaskClassif/taskclassif-duo.svg
• TaskClassif/taskclassif-pairs.svg
• TaskRegr/taskregr-pairs.svg
• TuningInstanceSingleCrit/tisc-incumbent.svg
• TuningInstanceSingleCrit/tisc-marginal-01.svg
• TuningInstanceSingleCrit/tisc-marginal-02.svg
• TuningInstanceSingleCrit/tisc-marginal-trafo-01.svg
• TuningInstanceSingleCrit/tisc-marginal-trafo-02.svg
• TuningInstanceSingleCrit/tisc-marginal-x-domain-01.svg
• TuningInstanceSingleCrit/tisc-parallel.svg
• TuningInstanceSingleCrit/tisc-parameter-01.svg
• TuningInstanceSingleCrit/tisc-parameter-02.svg
• TuningInstanceSingleCrit/tisc-parameter-return-list-01.svg
• TuningInstanceSingleCrit/tisc-parameter-return-list-02.svg
• TuningInstanceSingleCrit/tisc-parameter-trafo-01.svg
• TuningInstanceSingleCrit/tisc-parameter-trafo-02.svg
• TuningInstanceSingleCrit/tisc-parameter-x-domain-01.svg
• TuningInstanceSingleCrit/tisc-performance.svg
• TuningInstanceSingleCrit/tisc-points.svg
• TuningInstanceSingleCrit/tisc-surface-grid-50.svg
• TuningInstanceSingleCrit/tisc-surface-regr-lm.svg
• TuningInstanceSingleCrit/tisc-surface.svg
• plot_learner_prediction/learner-prediction-1d-se.svg
• plot_learner_prediction/learner-prediction-binary-prob.svg
• plot_learner_prediction/learner-prediction-binary-response.svg
• plot_learner_prediction/learner-prediction-categorical.svg
• plot_learner_prediction/learner-prediction-prob.svg
Error: Test failures
Execution halted
- checking PDF version of manual ... [9s/19s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 2 ERRORs