* installing *source* package ‘mkde’ ...
** this is package ‘mkde’ version ‘0.4’
** package ‘mkde’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
using C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/mkde/src'
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c mkdeFunctions.cpp -o mkdeFunctions.o
mkdeFunctions.cpp: In function ‘SEXPREC* writeRasterToXDMF02(SEXP, SEXP, SEXP, SEXP, SEXP)’:
mkdeFunctions.cpp:1367:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1367 | for (int i = 0; i < r.size(); i++) {
| ~~^~~~~~~~~~
mkdeFunctions.cpp: In function ‘SEXPREC* mkde3dGridv02interact(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
mkdeFunctions.cpp:901:47: warning: ‘tOld’ may be used uninitialized [-Wmaybe-uninitialized]
901 | tmpDens0 = (t - tOld) * pXYZ0 / 2.0;
| ~~~^~~~~~~
mkdeFunctions.cpp:768:23: note: ‘tOld’ was declared here
768 | double t0, t1, t, tOld, dt, alpha;
| ^~~~
mkdeFunctions.cpp: In function ‘SEXPREC* mkde2dGrid02(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
mkdeFunctions.cpp:300:42: warning: ‘tOld’ may be used uninitialized [-Wmaybe-uninitialized]
300 | tmpDens = (t - tOld) * pXY / 2.0;
| ~~~^~~~~~~
mkdeFunctions.cpp:242:23: note: ‘tOld’ was declared here
242 | double t0, t1, t, tOld, dt, alpha, totalT;
| ^~~~
mkdeFunctions.cpp: In function ‘SEXPREC* mkde3dGridv02(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
mkdeFunctions.cpp:658:46: warning: ‘tOld’ may be used uninitialized [-Wmaybe-uninitialized]
658 | tmpDens = (t - tOld) * pXYZ / 2.0;
| ~~~^~~~~~~
mkdeFunctions.cpp:567:23: note: ‘tOld’ was declared here
567 | double t0, t1, t, tOld, dt, alpha;
| ^~~~
mkdeFunctions.cpp: In function ‘SEXPREC* mkde2dGridv02interact(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
mkdeFunctions.cpp:471:42: warning: ‘tOld’ may be used uninitialized [-Wmaybe-uninitialized]
471 | tmpDens = (t - tOld) * pXY / 2.0;
| ~~~^~~~~~~
mkdeFunctions.cpp:386:23: note: ‘tOld’ was declared here
386 | double t0, t1, t, tOld, dt, alpha;
| ^~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o mkde.so init.o mkdeFunctions.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/mkde/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/mkde/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/mkde/src'
installing to /data/gannet/ripley/R/packages/tests-devel/mkde.Rcheck/00LOCK-mkde/00new/mkde/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mkde)