• using R Under development (unstable) (2025-02-20 r87760)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)     GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
• running under: Fedora Linux 40 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘miWQS/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘miWQS’ version ‘0.4.4’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... INFO Package suggested but not available for checking: ‘wqs’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘miWQS’ can be installed ... [23s/27s] OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [33s/35s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... NOTE Unknown package ‘wqs’ in Rd xrefs
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [12s/12s] ERROR Running examples in ‘miWQS-Ex.R’ failed The error most likely occurred in: > ### Name: estimate.wqs > ### Title: Weighted Quantile Sum (WQS) Regression > ### Aliases: estimate.wqs > ### Keywords: imputation wqs > > ### ** Examples > > # Example 1: Binary outcome using the example simulated dataset in this package. > data(simdata87) > set.seed(23456) > W.bin4 <- estimate.wqs( + y = simdata87$y.scenario, X = simdata87$X.true[, 1:9], + B = 10, family = "binomial", + verbose = TRUE + ) ## Outcome Summary    Min. 1st Qu. Median Mean 3rd Qu. Max.   0.000 0.000 0.000 0.457 1.000 1.000 ## Classes:            y X Z    "integer" "data.frame" "NULL" X  alpha.chlordane dieldrin gamma.chlordane lindane  Min. :0.000e+00 Min. : 0.111 Min. : 13.51 Min. : 3.513  1st Qu.:1.110e+01 1st Qu.: 14.344 1st Qu.: 36.68 1st Qu.:11.163  Median :1.254e+02 Median : 52.536 Median : 46.35 Median :14.981  Mean :4.410e+04 Mean : 433.116 Mean : 49.35 Mean :17.174  3rd Qu.:1.682e+03 3rd Qu.: 218.957 3rd Qu.: 58.91 3rd Qu.:21.129  Max. :1.735e+07 Max. :48673.296 Max. :139.34 Max. :75.360   methoxychlor dde ddt pentachlorophenol  Min. : 17.30 Min. : 0.02 Min. : 1.382 Min. : 1.615  1st Qu.: 55.83 1st Qu.: 13.69 1st Qu.: 7.307 1st Qu.: 8.390  Median : 75.17 Median : 84.22 Median : 12.290 Median : 14.651  Mean : 83.29 Mean : 2546.60 Mean : 16.119 Mean : 20.251  3rd Qu.:101.89 3rd Qu.: 529.84 3rd Qu.: 19.398 3rd Qu.: 23.942  Max. :316.07 Max. :383567.39 Max. :178.854 Max. :285.229     pcb_105  Min. : 0.109  1st Qu.: 3.317  Median : 7.458  Mean : 16.473  3rd Qu.: 17.779  Max. :400.360 y    Min. 1st Qu. Median Mean 3rd Qu. Max.   0.000 0.000 0.000 0.457 1.000 1.000 Z Length Class Mode      0 NULL NULL ## Place BDLs in Q1? FALSE #> No missing values in matrix detected. Regular quantiles computed. Error in sort.int(x, na.last = na.last, decreasing = decreasing, ...) :   index 1001 outside bounds Calls: estimate.wqs ... quantile.default -> sort -> sort.default -> sort.int Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... OK   Running ‘spelling.R’   Running ‘testthat.R’
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [39s/39s] OK
• checking PDF version of manual ... OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... NOTE Found the following files/directories:   ‘par-7269706c6579’
• DONE

Status: 1 ERROR, 2 NOTEs