* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/merDeriv.Rcheck’
* using R Under development (unstable) (2025-02-15 r87726)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘merDeriv/DESCRIPTION’ ... OK
* this is package ‘merDeriv’ version ‘0.2-4’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘merDeriv’ can be installed ... [16s/44s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/merDeriv-00install.html' for details.
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s/12s] OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... [4s/11s] OK
* checking loading without being on the library search path ... [4s/11s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [23s/66s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [4s/11s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [164s/481s] ERROR
  Running ‘tinytest.R’ [163s/480s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > 
  > if ( requireNamespace("tinytest", quietly=TRUE) ){
  +   tinytest::test_package("merDeriv")
  + }
  Loading required package: lme4
  Loading required package: Matrix
  Loading required package: nonnest2
  This is nonnest2 0.5-8.
  nonnest2 has not been tested with all combinations of supported model classes.
  Loading required package: sandwich
  Loading required package: lavaan
  This is lavaan 0.6-19
  lavaan is FREE software! Please report any bugs.
  
  test_merDeriv.R...............    0 tests    
  test_merDeriv.R...............    0 tests    Loading required package: stats4
  Loading required package: lattice
  
  Attaching package: 'mirt'
  
  The following object is masked from 'package:lme4':
  
      fixef
  
  
  test_merDeriv.R...............    0 tests    
  Attaching package: 'nlme'
  
  The following object is masked from 'package:mirt':
  
      fixef
  
  The following object is masked from 'package:lme4':
  
      lmList
  
  
  test_merDeriv.R...............    0 tests    
  test_merDeriv.R...............    0 tests    
  test_merDeriv.R...............    0 tests    
  test_merDeriv.R...............    1 tests 1 fails 
  test_merDeriv.R...............    1 tests 1 fails 
  test_merDeriv.R...............    2 tests 1 fails 
  test_merDeriv.R...............    2 tests 1 fails 
  test_merDeriv.R...............    2 tests 1 fails 
  test_merDeriv.R...............    2 tests 1 fails 
  test_merDeriv.R...............    3 tests 2 fails 
  test_merDeriv.R...............    4 tests 2 fails 
  test_merDeriv.R...............    4 tests 2 fails 
  test_merDeriv.R...............    4 tests 2 fails 
  test_merDeriv.R...............    4 tests 2 fails 
  test_merDeriv.R...............    4 tests 2 fails 
  test_merDeriv.R...............    4 tests 2 fails 
  test_merDeriv.R...............    4 tests 2 fails 
  test_merDeriv.R...............    4 tests 2 fails 
  test_merDeriv.R...............    5 tests 3 fails 
  test_merDeriv.R...............    6 tests 3 fails 
  test_merDeriv.R...............    7 tests 3 fails 
  test_merDeriv.R...............    8 tests 3 fails 
  test_merDeriv.R...............    8 tests 3 fails 
  test_merDeriv.R...............    9 tests 3 fails 
  test_merDeriv.R...............    9 tests 3 fails 
  test_merDeriv.R...............    9 tests 3 fails 
  test_merDeriv.R...............   10 tests 3 fails 
  test_merDeriv.R...............   11 tests 3 fails 
  test_merDeriv.R...............   11 tests 3 fails 
  test_merDeriv.R...............   12 tests 3 fails 
  test_merDeriv.R...............   12 tests 3 fails 
  test_merDeriv.R...............   12 tests 3 fails 
  test_merDeriv.R...............   13 tests 3 fails 
  test_merDeriv.R...............   14 tests 3 fails 
  test_merDeriv.R...............   14 tests 3 fails 
  test_merDeriv.R...............   14 tests 3 fails 
  test_merDeriv.R...............   14 tests 3 fails 
  test_merDeriv.R...............   14 tests 3 fails 
  test_merDeriv.R...............   14 tests 3 fails 
  test_merDeriv.R...............   14 tests 3 fails 
  test_merDeriv.R...............   14 tests 3 fails 
  test_merDeriv.R...............   14 tests 3 fails 
  test_merDeriv.R...............   14 tests 3 fails 
  test_merDeriv.R...............   15 tests 3 fails 
  test_merDeriv.R...............   15 tests 3 fails 
  test_merDeriv.R...............   15 tests 3 fails 
  test_merDeriv.R...............   16 tests 3 fails 
  test_merDeriv.R...............   17 tests 3 fails 
  test_merDeriv.R...............   17 tests 3 fails 
  test_merDeriv.R...............   17 tests 3 fails 
  test_merDeriv.R...............   17 tests 3 fails 
  test_merDeriv.R...............   17 tests 3 fails 
  test_merDeriv.R...............   17 tests 3 fails 
  test_merDeriv.R...............   18 tests 3 fails 
  test_merDeriv.R...............   19 tests 3 fails 
  test_merDeriv.R...............   19 tests 3 fails 
  test_merDeriv.R...............   19 tests 3 fails 
  test_merDeriv.R...............   19 tests 3 fails 
  test_merDeriv.R...............   19 tests 3 fails 
  test_merDeriv.R...............   20 tests 4 fails 
  test_merDeriv.R...............   20 tests 4 fails 
  test_merDeriv.R...............   20 tests 4 fails 
  test_merDeriv.R...............   20 tests 4 fails 
  test_merDeriv.R...............   21 tests 4 fails 
  test_merDeriv.R...............   22 tests 4 fails 
  test_merDeriv.R...............   23 tests 4 fails 7.8s
  ----- FAILED[data]: test_merDeriv.R<11--12>
   call| expect_equal(as.numeric(round(sum(llcont(lme4fit, level = 1)), 
   call| -->    4)), as.numeric(round(logLik(lme4fit), 4)))
   diff| Expected '-Inf', got 'NaN'
  ----- FAILED[data]: test_merDeriv.R<25--26>
   call| expect_equal(as.numeric(round(sum(llcont(subfit, level = 1)), 
   call| -->    4)), as.numeric(round(logLik(subfit), 4)))
   diff| Expected '-Inf', got 'NaN'
  ----- FAILED[data]: test_merDeriv.R<65--65>
   call| expect_true(all(score2_lavaan - score2 < 0.001))
   diff| Expected TRUE, got FALSE
  ----- FAILED[data]: test_merDeriv.R<153--153>
   call| expect_true(all(abs(nlmeres - lme4res) < 1))
   diff| Expected TRUE, got FALSE
  Error: 4 out of 23 tests failed
  In addition: There were 17 warnings (use warnings() to see them)
  Execution halted
* checking PDF version of manual ... [7s/23s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR