* installing *source* package ‘matrixStats’ ...
** this is package ‘matrixStats’ version ‘1.5.0’
** package ‘matrixStats’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/matrixStats/src'
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c 000.init.c -o 000.init.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c allocMatrix2.c -o allocMatrix2.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c anyMissing.c -o anyMissing.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c binCounts.c -o binCounts.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c binMeans.c -o binMeans.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c colCounts.c -o colCounts.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c colOrderStats.c -o colOrderStats.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c colRanges.c -o colRanges.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c diff2.c -o diff2.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c indexByRow.c -o indexByRow.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c logSumExp.c -o logSumExp.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mean2.c -o mean2.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c naming.c -o naming.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c productExpSumLog.c -o productExpSumLog.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c psortKM.c -o psortKM.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c rowCounts.c -o rowCounts.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c rowCummaxs.c -o rowCummaxs.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c rowCummins.c -o rowCummins.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c rowCumprods.c -o rowCumprods.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c rowCumsums.c -o rowCumsums.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c rowDiffs.c -o rowDiffs.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c rowLogSumExp.c -o rowLogSumExp.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c rowMads.c -o rowMads.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c rowMeans2.c -o rowMeans2.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c rowMedians.c -o rowMedians.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c rowOrderStats.c -o rowOrderStats.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c rowRanges.c -o rowRanges.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c rowRanksWithTies.c -o rowRanksWithTies.o
In file included from rowRanksWithTies_lowlevel.h:23,
from rowRanksWithTies.c:10:
rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Average_dbl’:
rowRanksWithTies_lowlevel_template.h:169:22: warning: ‘lastFinite_val’ may be used uninitialized [-Wmaybe-uninitialized]
169 | values[ jj ] = lastFinite_val;
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
rowRanksWithTies_lowlevel_template.h:150:18: note: ‘lastFinite_val’ was declared here
150 | X_C_TYPE lastFinite_val;
| ^~~~~~~~~~~~~~
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c rowSums2.c -o rowSums2.o
In file included from rowSums2_lowlevel.h:14,
from rowSums2.c:12:
rowSums2_lowlevel_template.h: In function ‘rowSums2_int’:
rowSums2_lowlevel_template.h:96:24: warning: ‘rowSum’ may be used uninitialized [-Wmaybe-uninitialized]
96 | rowSum[ii] = R_NaReal;
| ~~~~~~~~~~~^~~~~~~~~~
rowSums2_lowlevel_template.h:35:14: note: ‘rowSum’ was declared here
35 | LDOUBLE *rowSum;
| ^~~~~~
In file included from rowSums2_lowlevel.h:18:
rowSums2_lowlevel_template.h: In function ‘rowSums2_dbl’:
rowSums2_lowlevel_template.h:114:24: warning: ‘rowSum’ may be used uninitialized [-Wmaybe-uninitialized]
114 | rowSum[ii] += (LDOUBLE)value;
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~
rowSums2_lowlevel_template.h:35:14: note: ‘rowSum’ was declared here
35 | LDOUBLE *rowSum;
| ^~~~~~
In file included from rowRanksWithTies_lowlevel.h:40:
rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_First_dbl’:
rowRanksWithTies_lowlevel_template.h:169:22: warning: ‘lastFinite_val’ may be used uninitialized [-Wmaybe-uninitialized]
169 | values[ jj ] = lastFinite_val;
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
rowRanksWithTies_lowlevel_template.h:150:18: note: ‘lastFinite_val’ was declared here
150 | X_C_TYPE lastFinite_val;
| ^~~~~~~~~~~~~~
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c rowVars.c -o rowVars.o
In file included from rowRanksWithTies_lowlevel.h:57:
rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Last_dbl’:
rowRanksWithTies_lowlevel_template.h:169:22: warning: ‘lastFinite_val’ may be used uninitialized [-Wmaybe-uninitialized]
169 | values[ jj ] = lastFinite_val;
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
rowRanksWithTies_lowlevel_template.h:150:18: note: ‘lastFinite_val’ was declared here
150 | X_C_TYPE lastFinite_val;
| ^~~~~~~~~~~~~~
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c signTabulate.c -o signTabulate.o
In file included from rowRanksWithTies_lowlevel.h:91:
rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Min_dbl’:
rowRanksWithTies_lowlevel_template.h:169:22: warning: ‘lastFinite_val’ may be used uninitialized [-Wmaybe-uninitialized]
169 | values[ jj ] = lastFinite_val;
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
rowRanksWithTies_lowlevel_template.h:150:18: note: ‘lastFinite_val’ was declared here
150 | X_C_TYPE lastFinite_val;
| ^~~~~~~~~~~~~~
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sum2.c -o sum2.o
In file included from rowRanksWithTies_lowlevel.h:108:
rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Max_dbl’:
rowRanksWithTies_lowlevel_template.h:169:22: warning: ‘lastFinite_val’ may be used uninitialized [-Wmaybe-uninitialized]
169 | values[ jj ] = lastFinite_val;
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
rowRanksWithTies_lowlevel_template.h:150:18: note: ‘lastFinite_val’ was declared here
150 | X_C_TYPE lastFinite_val;
| ^~~~~~~~~~~~~~
In file included from rowRanksWithTies_lowlevel.h:125:
rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Dense_dbl’:
rowRanksWithTies_lowlevel_template.h:169:22: warning: ‘lastFinite_val’ may be used uninitialized [-Wmaybe-uninitialized]
169 | values[ jj ] = lastFinite_val;
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
rowRanksWithTies_lowlevel_template.h:150:18: note: ‘lastFinite_val’ was declared here
150 | X_C_TYPE lastFinite_val;
| ^~~~~~~~~~~~~~
In file included from rowRanksWithTies_lowlevel.h:74:
rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Random_dbl’:
rowRanksWithTies_lowlevel_template.h:169:22: warning: ‘lastFinite_val’ may be used uninitialized [-Wmaybe-uninitialized]
169 | values[ jj ] = lastFinite_val;
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
rowRanksWithTies_lowlevel_template.h:150:18: note: ‘lastFinite_val’ was declared here
150 | X_C_TYPE lastFinite_val;
| ^~~~~~~~~~~~~~
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c validateIndices.c -o validateIndices.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c weightedMean.c -o weightedMean.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c weightedMedian.c -o weightedMedian.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c x_OP_y.c -o x_OP_y.o
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o naming.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/matrixStats/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/matrixStats/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/matrixStats/src'
installing to /data/gannet/ripley/R/packages/tests-devel/matrixStats.Rcheck/00LOCK-matrixStats/00new/matrixStats/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (matrixStats)