• using R Under development (unstable) (2025-03-13 r87951)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)     GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
• running under: Fedora Linux 40 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘manymodelr/DESCRIPTION’ ... OK
• this is package ‘manymodelr’ version ‘0.3.7’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘manymodelr’ can be installed ... [33s/88s] OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [10s/35s] OK
• checking whether the package can be loaded with stated dependencies ... [9s/18s] OK
• checking whether the package can be unloaded cleanly ... [9s/25s] OK
• checking whether the namespace can be loaded with stated dependencies ... [8s/25s] OK
• checking whether the namespace can be unloaded cleanly ... [10s/30s] OK
• checking loading without being on the library search path ... [10s/25s] OK
• checking whether startup messages can be suppressed ... [10s/25s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [44s/113s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [11s/29s] ERROR Running examples in ‘manymodelr-Ex.R’ failed The error most likely occurred in: > ### Name: agg_by_group > ### Title: A convenient way to perform grouped operations > ### Aliases: agg_by_group > > ### ** Examples > > head(agg_by_group(airquality,.~Month,sum)) Error in gsub(as.character(pattern), as.character(replacement), x, ignore.case, :   NA in coercion to boolean Calls: head ... sub -> is.factor -> mysub -> sub -> is.factor -> gsub Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [20s/54s] ERROR   Running ‘testthat.R’ [19s/52s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(manymodelr)   Loading required package: caret   Loading required package: ggplot2   Loading required package: lattice   Loading required package: Metrics      Attaching package: 'Metrics'      The following objects are masked from 'package:caret':          precision, recall      Loading required package: e1071   Welcome to manymodelr. This is manymodelr version 0.3.7.    Please file issues and feedback at https://www.github.com/Nelson-Gon/manymodelr/issues   Turn this message off using 'suppressPackageStartupMessages(library(manymodelr))'    Happy Modelling! :)   > data("yields", package = "manymodelr")   > test_check("manymodelr")   [1] ### Ordered by height ###   [1] ### Ordered by height ###   [ FAIL 1 | WARN 5 | SKIP 0 | PASS 94 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_agg_by_group.R:11:5'): agg_by_group test ───────────────────────   Error in `gsub(as.character(pattern), as.character(replacement), x, ignore.case,       perl, fixed, useBytes)`: NA in coercion to boolean   Backtrace:        ▆     1. ├─testthat::expect_equal(...) at test_agg_by_group.R:11:5     2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")     3. │ └─rlang::eval_bare(expr, quo_get_env(quo))     4. ├─manymodelr::agg_by_group(yields, . ~ normal, length)     5. └─manymodelr:::agg_by_group.data.frame(yields, . ~ normal, length)     6. ├─base::trimws(...)     7. │ ├─base (local) mysub(...)     8. │ │ └─base::sub(re, "", x, perl = TRUE)     9. │ │ └─base::is.factor(x)    10. │ └─base (local) mysub(paste0("^", whitespace, "+"), x)    11. │ └─base::sub(re, "", x, perl = TRUE)    12. │ └─base::is.factor(x)    13. └─base::gsub(...)      [ FAIL 1 | WARN 5 | SKIP 0 | PASS 94 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [81s/238s] ERROR Error(s) in re-building vignettes: --- re-building ‘correlations.rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/manymodelr.Rcheck/vign_test/manymodelr/vignettes/correlations_files/figure-html/unnamed-chunk-5-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 118359 bytes Input file size = 118605 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102759   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102759 Output IDAT size = 102759 bytes (15600 bytes decrease) Output file size = 102837 bytes (15768 bytes = 13.29% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/manymodelr.Rcheck/vign_test/manymodelr/vignettes/correlations_files/figure-html/unnamed-chunk-6-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 92706 bytes Input file size = 92916 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 72957   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 72957 Output IDAT size = 72957 bytes (19749 bytes decrease) Output file size = 73035 bytes (19881 bytes = 21.40% decrease) --- finished re-building ‘correlations.rmd’ --- re-building ‘manymodelr_vignette.rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/manymodelr.Rcheck/vign_test/manymodelr/vignettes/manymodelr_vignette_files/figure-html/unnamed-chunk-20-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 118359 bytes Input file size = 118605 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102759   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102759 Output IDAT size = 102759 bytes (15600 bytes decrease) Output file size = 102837 bytes (15768 bytes = 13.29% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/manymodelr.Rcheck/vign_test/manymodelr/vignettes/manymodelr_vignette_files/figure-html/unnamed-chunk-21-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 92706 bytes Input file size = 92916 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 72957   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 72957 Output IDAT size = 72957 bytes (19749 bytes decrease) Output file size = 73035 bytes (19881 bytes = 21.40% decrease) Quitting from lines 296-299 [unnamed-chunk-22] (manymodelr_vignette.rmd) Error: processing vignette 'manymodelr_vignette.rmd' failed with diagnostics: NA in coercion to boolean --- failed re-building ‘manymodelr_vignette.rmd’ --- re-building ‘misc.rmd’ using rmarkdown Quitting from lines 30-34 [unnamed-chunk-2] (misc.rmd) Error: processing vignette 'misc.rmd' failed with diagnostics: NA in coercion to boolean --- failed re-building ‘misc.rmd’ --- re-building ‘modeling.rmd’ using rmarkdown --- finished re-building ‘modeling.rmd’ SUMMARY: processing the following files failed:   ‘manymodelr_vignette.rmd’ ‘misc.rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [8s/27s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 3 ERRORs