- using R Under development (unstable) (2025-02-28 r87848)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
- running under: Fedora Linux 40 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘manymodelr/DESCRIPTION’ ... OK
- this is package ‘manymodelr’ version ‘0.3.7’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘manymodelr’ can be installed ... [26s/71s] OK
See the install log for details.
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [8s/22s] OK
- checking whether the package can be loaded with stated dependencies ... [6s/15s] OK
- checking whether the package can be unloaded cleanly ... [6s/16s] OK
- checking whether the namespace can be loaded with stated dependencies ... [6s/14s] OK
- checking whether the namespace can be unloaded cleanly ... [8s/22s] OK
- checking loading without being on the library search path ... [8s/19s] OK
- checking whether startup messages can be suppressed ... [8s/21s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [34s/92s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [8s/31s] ERROR
Running examples in ‘manymodelr-Ex.R’ failed
The error most likely occurred in:
> ### Name: agg_by_group
> ### Title: A convenient way to perform grouped operations
> ### Aliases: agg_by_group
>
> ### ** Examples
>
> head(agg_by_group(airquality,.~Month,sum))
Error in gsub(as.character(pattern), as.character(replacement), x, ignore.case, :
NA in coercion to bool
Calls: head ... sub -> is.factor -> mysub -> sub -> is.factor -> gsub
Execution halted
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [17s/87s] ERROR
Running ‘testthat.R’ [17s/85s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(manymodelr)
Loading required package: caret
Loading required package: ggplot2
Loading required package: lattice
Loading required package: Metrics
Attaching package: 'Metrics'
The following objects are masked from 'package:caret':
precision, recall
Loading required package: e1071
Welcome to manymodelr. This is manymodelr version 0.3.7.
Please file issues and feedback at https://www.github.com/Nelson-Gon/manymodelr/issues
Turn this message off using 'suppressPackageStartupMessages(library(manymodelr))'
Happy Modelling! :)
> data("yields", package = "manymodelr")
> test_check("manymodelr")
[1] ### Ordered by height ###
[1] ### Ordered by height ###
[ FAIL 1 | WARN 7 | SKIP 0 | PASS 94 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_agg_by_group.R:11:5'): agg_by_group test ───────────────────────
Error in `gsub(as.character(pattern), as.character(replacement), x, ignore.case,
perl, fixed, useBytes)`: NA in coercion to bool
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test_agg_by_group.R:11:5
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─manymodelr::agg_by_group(yields, . ~ normal, length)
5. └─manymodelr:::agg_by_group.data.frame(yields, . ~ normal, length)
6. ├─base::trimws(...)
7. │ ├─base (local) mysub(...)
8. │ │ └─base::sub(re, "", x, perl = TRUE)
9. │ │ └─base::is.factor(x)
10. │ └─base (local) mysub(paste0("^", whitespace, "+"), x)
11. │ └─base::sub(re, "", x, perl = TRUE)
12. │ └─base::is.factor(x)
13. └─base::gsub(...)
[ FAIL 1 | WARN 7 | SKIP 0 | PASS 94 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [72s/405s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘correlations.rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/manymodelr.Rcheck/vign_test/manymodelr/vignettes/correlations_files/figure-html/unnamed-chunk-5-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 118359 bytes
Input file size = 118605 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102759
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102759
Output IDAT size = 102759 bytes (15600 bytes decrease)
Output file size = 102837 bytes (15768 bytes = 13.29% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/manymodelr.Rcheck/vign_test/manymodelr/vignettes/correlations_files/figure-html/unnamed-chunk-6-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 92706 bytes
Input file size = 92916 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 72957
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 72957
Output IDAT size = 72957 bytes (19749 bytes decrease)
Output file size = 73035 bytes (19881 bytes = 21.40% decrease)
--- finished re-building ‘correlations.rmd’
--- re-building ‘manymodelr_vignette.rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/manymodelr.Rcheck/vign_test/manymodelr/vignettes/manymodelr_vignette_files/figure-html/unnamed-chunk-20-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 118359 bytes
Input file size = 118605 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102759
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102759
Output IDAT size = 102759 bytes (15600 bytes decrease)
Output file size = 102837 bytes (15768 bytes = 13.29% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/manymodelr.Rcheck/vign_test/manymodelr/vignettes/manymodelr_vignette_files/figure-html/unnamed-chunk-21-1.png
1344x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 92706 bytes
Input file size = 92916 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 72957
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 72957
Output IDAT size = 72957 bytes (19749 bytes decrease)
Output file size = 73035 bytes (19881 bytes = 21.40% decrease)
Quitting from lines 296-299 [unnamed-chunk-22] (manymodelr_vignette.rmd)
Error: processing vignette 'manymodelr_vignette.rmd' failed with diagnostics:
NA in coercion to bool
--- failed re-building ‘manymodelr_vignette.rmd’
--- re-building ‘misc.rmd’ using rmarkdown
Quitting from lines 30-34 [unnamed-chunk-2] (misc.rmd)
Error: processing vignette 'misc.rmd' failed with diagnostics:
NA in coercion to bool
--- failed re-building ‘misc.rmd’
--- re-building ‘modeling.rmd’ using rmarkdown
--- finished re-building ‘modeling.rmd’
SUMMARY: processing the following files failed:
‘manymodelr_vignette.rmd’ ‘misc.rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [7s/16s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 3 ERRORs