* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/lucid.Rcheck’
* using R Under development (unstable) (2025-02-15 r87726)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘lucid/DESCRIPTION’ ... OK
* this is package ‘lucid’ version ‘1.8’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘lucid’ can be installed ... [4s/10s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/lucid-00install.html' for details.
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/14s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [7s/21s] ERROR
  Running ‘testthat.R’ [6s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(lucid)
  > 
  > test_check("lucid")
    id P1 P2          P3
  1  A  a -1 3.3175e-140
  2  B  b  0 1.0637e-165
  3  C c   1 1.1279e-157
    id P1 P2
  1  A  a -1
  2  B  b  0
  3  C c   1
                                                                                                                                                  P3
  1 0.0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000332
  2 0                                                                                                                                               
  3 0                                                                                                                                               
        effect variance stddev
   (Intercept)   615.3  24.81 
      Residual    16.17  4.021
        grp        var1 var2   vcov  sdcor
       Rail (Intercept) <NA> 729    27    
   Residual        <NA> <NA>  15.19  3.897
        grp        var1 var2   vcov sdcor
       Rail (Intercept) <NA>  1.638 1.28 
   Residual        <NA> <NA> 11.11  3.333
  iteration    LogLik     wall    cpu(sec)   restrained
      1      -5.78344   20:33:8      0           0
      2      1.8756   20:33:8      0           0
      3      8.51187   20:33:8      0           0
      4      9.74181   20:33:8      0           0
      5      9.75215   20:33:8      0           0
      6      9.75225   20:33:8      0           0
                effect VarComp VarCompSE Zratio Constr
    Rail.travel-travel  615.3    392.3      1.6      P
   units.travel-travel   16.17     6.602    2.4      P
  [ FAIL 1 | WARN 3 | SKIP 2 | PASS 21 ]
  
  ══ Skipped tests (2) ═══════════════════════════════════════════════════════════
  • empty test (2): 'test_lucid.R:150:1', 'test_vc.R:74:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_vc.R:37:3'): lmer ────────────────────────────────────────────
  vc(m1l) not equal to structure(...).
  Component "vcov": Mean relative difference: 0.1540472
  
  [ FAIL 1 | WARN 3 | SKIP 2 | PASS 21 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [28s/76s] OK
* checking PDF version of manual ... [7s/18s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR