• using R Under development (unstable) (2025-02-15 r87723)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)     GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
• running under: Fedora Linux 40 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘logrx/DESCRIPTION’ ... OK
• this is package ‘logrx’ version ‘0.3.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘logrx’ can be installed ... [10s/11s] OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [13s/17s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [10s/15s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [45s/67s] ERROR   Running ‘testthat.R’ [45s/67s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(logrx)   >   > test_check("logrx")   [1] "hello logrx"   hello logrx   this is outputhello logrx   this is outputhello logrx   this is outputhello logrx   this is output      processing file: ex1.Rmd   [1] "print"   output file: ex1.knit.md      /data/gannet/ripley/bin/pandoc +RTS -K512m -RTS ex1.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output ex1.html --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/table-classes.lua --embed-resources --standalone --variable bs3=TRUE --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/h/default.html --no-highlight --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable 'mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --include-in-header /tmp/RtmpsEgPOb/working_dir/RtmpIj6DFT/rmarkdown-str158736559d923d.html      Output created: ex1.html   Warning in for (i in 1L:d2) { :     closing unused connection 4 (/tmp/RtmpsEgPOb/working_dir/RtmpIj6DFT/log_out_nested.Rds)         processing file: ref/ex1.Rmd   output file: /tmp/RtmpsEgPOb/working_dir/RtmpIj6DFT/file1587364171096.R      Rows: 3   Columns: 2   $ cyl <dbl> 4, 6, 8   $ mean <dbl> 26.66364, 19.74286, 15.10000   [1] "hello logrx"   Error: ref/ex4.R:5:0: unexpected end of input   3:   4: print("hello logrx"     ^   [1] 1   [1] 1         processing file: ref/ex1.Rmd   output file: /tmp/RtmpsEgPOb/working_dir/RtmpIj6DFT/file1587367be7b0e6.R      [1] "print"   [1] "log print"   [1] "log print 2"   log catlog cat 2log inform   log inform 2   log message   log message 2   Error: log error      Attaching package: 'magrittr'      The following objects are masked from 'package:testthat':          equals, is_less_than, not      [1] "hello logrx"   hello logrx   this is outputhello again logrx   this is outputhello logrx   this is output[1] "log print"   [1] "log print 2"   log catlog cat 2log inform   log inform 2   log message   log message 2   Error: log error   [1] "log print"   [1] "log print 2"   log catlog cat 2log inform   log inform 2   log message   log message 2   Error: log error   [1] 1   [1] 1   [ FAIL 2 | WARN 9 | SKIP 0 | PASS 113 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-get.R:191:4'): library lint returns expected result when multiple linters are set ──   write_lint_results() (`actual`) not identical to `expected` (`expected`).      lines(actual)[1:6] vs lines(expected)[1:6]     "Line 6 [library_call_linter] Move all library calls to the top of the script."     ""   - "Line 8 [undesirable_operator_linter] Avoid undesirable operator `<<-`. It"   + "Line 8 [undesirable_operator_linter] Operator `<<-` is undesirable. It"     "assigns outside the current environment in a way that can be hard to reason"     "about. Prefer fully-encapsulated functions wherever possible, or, if"     "necessary, assign to a specific environment with assign(). Recall that you"   ── Failure ('test-writer.R:196:4'): write_lint_results will return a formatted lint results element ──   write_lint_results() (`actual`) not identical to paste0(...) (`expected`).      lines(actual)[1:10] vs lines(expected)[1:10]   - "Line 3 [undesirable_operator_linter] Avoid undesirable operator `<<-`. It"   + "Line 3 [undesirable_operator_linter] Operator `<<-` is undesirable. It"     "assigns outside the current environment in a way that can be hard to reason"     "about. Prefer fully-encapsulated functions wherever possible, or, if"     "necessary, assign to a specific environment with assign(). Recall that you"     "can create an environment at the desired scope with new.env()."     ""   - "Line 4 [undesirable_operator_linter] Avoid undesirable operator `<<-`. It"   + "Line 4 [undesirable_operator_linter] Operator `<<-` is undesirable. It"     "assigns outside the current environment in a way that can be hard to reason"     "about. Prefer fully-encapsulated functions wherever possible, or, if"     "necessary, assign to a specific environment with assign(). Recall that you"      [ FAIL 2 | WARN 9 | SKIP 0 | PASS 113 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [34s/48s] OK
• checking PDF version of manual ... [8s/11s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR