• using R Under development (unstable) (2024-11-15 r87338)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (GCC) 14.2.0     GNU Fortran (GCC) 14.2.0
• running under: Fedora Linux 36 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘lme4/DESCRIPTION’ ... OK
• this is package ‘lme4’ version ‘1.1-35.5’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘lme4’ can be installed ... [164s/123s] OK See the install log for details.
• used C++ compiler: ‘g++-14 (GCC) 14.2.0’
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [63s/82s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking R/sysdata.rda ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... NOTE File ‘lme4/libs/lme4.so’:   Found non-API call to R: ‘SET_TYPEOF’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points.
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [28s/38s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [392s/533s] OK   Running ‘AAAtest-all.R’ [76s/103s]   Running ‘HSAURtrees.R’   Running ‘REMLdev.R’   Running ‘ST.R’   Running ‘agridat_gotway.R’   Running ‘bootMer.R’ [11s/26s]   Running ‘boundary.R’ [13s/15s]   Running ‘confint.R’ [7s/11s]   Running ‘devCritFun.R’   Running ‘drop.R’   Running ‘drop1contrasts.R’   Running ‘dynload.R’ [13s/19s]   Running ‘elston.R’   Running ‘evalCall.R’   Running ‘extras.R’   Running ‘falsezero_dorie.R’   Running ‘fewlevels.R’   Running ‘getME.R’   Running ‘glmer-1.R’ [7s/11s]   Running ‘glmerControlPass.R’ [10s/12s]   Running ‘glmerWarn.R’   Running ‘glmmExt.R’ [12s/17s]   Running ‘glmmWeights.R’ [12s/13s]   Running ‘hatvalues.R’   Running ‘is.R’   Running ‘lmList-tst.R’   Running ‘lme4_nlme.R’   Running ‘lmer-0.R’   Running ‘lmer-1.R’   Running ‘lmer-conv.R’   Running ‘lmer2_ex.R’   Running ‘methods.R’   Running ‘minval.R’   Running ‘modFormula.R’   Running ‘nbinom.R’   Running ‘nlmer-conv.R’   Running ‘nlmer.R’   Running ‘offset.R’   Running ‘optimizer.R’   Running ‘polytomous.R’   Running ‘prLogistic.R’   Running ‘predict_basis.R’   Running ‘predsim.R’   Running ‘priorWeights.R’ [9s/13s]   Running ‘priorWeightsModComp.R’   Running ‘profile-tst.R’   Running ‘refit.R’   Running ‘resids.R’   Running ‘respiratory.R’ [11s/12s]   Running ‘simulate.R’   Running ‘test-glmernbref.R’   Running ‘testOptControl.R’   Running ‘testcolonizer.R’   Running ‘testcrab.R’ [13s/17s]   Running ‘throw.R’   Running ‘varcorr.R’   Running ‘vcov-etc.R’
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [114s/167s] OK
• checking PDF version of manual ... [20s/31s] OK
• checking HTML version of manual ... [10s/15s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 NOTE