- using R Under development (unstable) (2025-02-15 r87726)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
- running under: Fedora Linux 40 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘intamapInteractive/DESCRIPTION’ ... OK
- this is package ‘intamapInteractive’ version ‘1.2-6’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘intamapInteractive’ can be installed ... [35s/93s] OK
See the install log for details.
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [8s/20s] OK
- checking whether the package can be loaded with stated dependencies ... [9s/26s] OK
- checking whether the package can be unloaded cleanly ... [9s/22s] OK
- checking whether the namespace can be loaded with stated dependencies ... [8s/21s] OK
- checking whether the namespace can be unloaded cleanly ... [8s/22s] OK
- checking loading without being on the library search path ... [8s/23s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [54s/146s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [12s/33s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [39m/44m] ERROR
Running ‘anisotropyChoice.R’ [10s/25s]
Running ‘biasCorr.R’ [10s/26s]
Running ‘findLocalBias.R’ [9s/23s]
Running ‘findRegionalBias.R’ [10s/28s]
Running ‘optimizingTest.R’ [39m/43m]
Running the tests in ‘tests/optimizingTest.R’ failed.
Complete output:
> options(error = recover)
> #test = TRUE
> test = FALSE
> mantest = FALSE
> set.seed(1)
> library(intamapInteractive)
Loading required package: intamap
Loading required package: sp
> library(gstat)
> #require(maptools)
> # for SIC2004 dataset
> data(sic2004)
> coordinates(sic.val) = ~x+y
> observations = sic.val["dayx"]
> coordinates(sic.grid)=~x+y
> predGrid = sic.grid
>
> #Finding the polygon for the candidate locations
> bb = bbox(predGrid)
> boun = SpatialPoints(data.frame(x=c(bb[1,1],bb[1,2],bb[1,2],bb[1,1],bb[1,1]),
+ y=c(bb[2,1],bb[2,1],bb[2,2],bb[2,2],bb[2,1])))
> Srl = Polygons(list(Polygon(boun)),ID = as.character(1))
> candidates = SpatialPolygonsDataFrame(SpatialPolygons(list(Srl)),
+ data = data.frame(ID=1))
>
> # Limits the number of prediction locations to have faster UK
> # computations
> nGrid = dim(coordinates(predGrid))[1]
> predGrid = predGrid[sample(seq(1,nGrid),1000),]
> # Fits the variogram model (using function fit.variogram from package
> # gstat)
> model = fit.variogram(variogram(dayx~x+y, sic.val), vgm(50, "Sph", 250000, 250))
> #plot(variogram(dayx~x+y, sic.val), model=model)
> # Computes the Mukv of the current network
> initMukv <- calculateMukv(observations, predGrid, model, formulaString = dayx~x+y)
- checking PDF version of manual ... OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR