* installing *source* package ‘icosa’ ...
** this is package ‘icosa’ version ‘0.11.1’
** package ‘icosa’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
using C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/icosa/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c PointInTetra.cpp -o PointInTetra.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RccpSource_.cpp -o RccpSource_.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c Rccp_coordinateFlattening.cpp -o Rccp_coordinateFlattening.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c init.c -o init.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c plottingMatrices.cpp -o plottingMatrices.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o icosa.so PointInTetra.o RccpSource_.o Rccp_coordinateFlattening.o RcppExports.o init.o plottingMatrices.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/icosa/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/icosa/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/icosa/src'
installing to /data/gannet/ripley/R/packages/tests-devel/icosa.Rcheck/00LOCK-icosa/00new/icosa/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
in method for ‘OccupiedFaces’ with signature ‘"trigrid","SpatRaster"’: no definition for class “SpatRaster”
in method for ‘vertices’ with signature ‘"facelayer"’: no definition for class “facelayer”
in method for ‘faces’ with signature ‘"gridlayer"’: no definition for class “gridlayer”
in method for ‘edges’ with signature ‘"facelayer"’: no definition for class “facelayer”
in method for ‘centers’ with signature ‘"facelayer"’: no definition for class “facelayer”
in method for ‘resample’ with signature ‘"SpatRaster","trigrid"’: no definition for class “SpatRaster”
Creating a generic function for ‘sd’ from package ‘stats’ in package ‘icosa’
in method for ‘[’ with signature ‘"gridlayer","SpatExtent","missing"’: no definition for class “SpatExtent”
in method for ‘resample’ with signature ‘"facelayer","SpatRaster"’: no definition for class “SpatRaster”
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (icosa)