* installing *source* package ‘hclust1d’ ...
** this is package ‘hclust1d’ version ‘0.1.1’
** package ‘hclust1d’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/hclust1d/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dedistance.cpp -o dedistance.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c hclust1d_heapbased.cpp -o hclust1d_heapbased.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c hclust1d_single.cpp -o hclust1d_single.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c heap.cpp -o heap.o
hclust1d_heapbased.cpp: In function ‘Rcpp::List hclust1d_heapbased(Rcpp::NumericVector&, int)’:
hclust1d_heapbased.cpp:229:61: warning: ‘id_cluster_count’ may be used uninitialized [-Wmaybe-uninitialized]
229 | (left_part_cluster_counts[left_id] + id_cluster_count);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
hclust1d_heapbased.cpp:149:9: note: ‘id_cluster_count’ was declared here
149 | int id_cluster_count;
| ^~~~~~~~~~~~~~~~
hclust1d_heapbased.cpp:221:53: warning: ‘id_centroid_aggregate’ may be used uninitialized [-Wmaybe-uninitialized]
221 | double distance = id_centroid_aggregate / id_cluster_count -
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
hclust1d_heapbased.cpp:150:12: note: ‘id_centroid_aggregate’ was declared here
150 | double id_centroid_aggregate;
| ^~~~~~~~~~~~~~~~~~~~~
hclust1d_heapbased.cpp:263:63: warning: ‘id_rightish_weighted_distance_sums’ may be used uninitialized [-Wmaybe-uninitialized]
263 | right_part_rightish_weighted_distance_sums[left_id] = id_rightish_weighted_distance_sums;
hclust1d_heapbased.cpp:151:12: note: ‘id_rightish_weighted_distance_sums’ was declared here
151 | double id_rightish_weighted_distance_sums;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hclust1d_heapbased.cpp:259:32: warning: ‘id_leftish_weighted_distance_sums’ may be used uninitialized [-Wmaybe-uninitialized]
259 | 0.5 * id_leftish_weighted_distance_sums +
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hclust1d_heapbased.cpp:152:12: note: ‘id_leftish_weighted_distance_sums’ was declared here
152 | double id_leftish_weighted_distance_sums;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c order.cpp -o order.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sqrt.cpp -o sqrt.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o hclust1d.so RcppExports.o dedistance.o hclust1d_heapbased.o hclust1d_single.o heap.o order.o sqrt.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/hclust1d/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/hclust1d/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/hclust1d/src'
installing to /data/gannet/ripley/R/packages/tests-devel/hclust1d.Rcheck/00LOCK-hclust1d/00new/hclust1d/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hclust1d)