* installing *source* package ‘grainscape’ ...
** this is package ‘grainscape’ version ‘0.5.0’
** package ‘grainscape’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
using C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/grainscape/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c Engine.cpp -o Engine.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
Engine.cpp: In member function ‘bool Engine::initialize()’:
Engine.cpp:153:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  153 |   for (unsigned int i = 0; i < in_data->nrow; i++) {
      |                            ~~^~~~~~~~~~~~~~~
Engine.cpp:154:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  154 |     for (unsigned int j = 0; j < in_data->ncol; j++) {
      |                              ~~^~~~~~~~~~~~~~~
Engine.cpp: In member function ‘void Engine::updateOutputMap(std::vector<float>&, flMap)’:
Engine.cpp:242:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  242 |   for (unsigned int i = 0; i < in_data->nrow; i++) {
      |                            ~~^~~~~~~~~~~~~~~
Engine.cpp:243:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  243 |     for (unsigned int j = 0; j < in_data->ncol; j++) {
      |                              ~~^~~~~~~~~~~~~~~
Engine.cpp: In member function ‘void Engine::writeErrorMessage(char*, int)’:
Engine.cpp:390:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  390 |   for (unsigned int i = 0; i < error_message_size; i++) {
      |                            ~~^~~~~~~~~~~~~~~~~~~~
Engine.cpp:391:11: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  391 |     if (i < size) {
      |         ~~^~~~~~
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c grainscape_init.c -o grainscape_init.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rcpp_HabConnEngine.cpp -o rcpp_HabConnEngine.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o grainscape.so Engine.o RcppExports.o grainscape_init.o rcpp_HabConnEngine.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/grainscape/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/grainscape/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/grainscape/src'
installing to /data/gannet/ripley/R/packages/tests-devel/grainscape.Rcheck/00LOCK-grainscape/00new/grainscape/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (grainscape)