* installing *source* package ‘gpboost’ ...
** package ‘gpboost’ successfully unpacked and MD5 sums checked
** using staged installation
checking location of R... /data/gannet/ripley/R/R-devel
checking whether MM_PREFETCH works... yes
checking whether MM_MALLOC works... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc-14 (GCC) 14.2.0’
using C++ compiler: ‘g++-14 (GCC) 14.2.0’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/gpboost/src'
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c boosting/boosting.cpp -o boosting/boosting.o
In file included from ./include/LightGBM/utils/common.h:12,
from ./include/LightGBM/config.h:23,
from ./include/LightGBM/boosting.h:8,
from boosting/boosting.cpp:5:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c boosting/gbdt.cpp -o boosting/gbdt.o
In file included from ./include/LightGBM/utils/common.h:12,
from ./include/LightGBM/config.h:23,
from ./include/LightGBM/boosting.h:8,
from boosting/gbdt.h:9,
from boosting/gbdt.cpp:6:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c boosting/gbdt_model_text.cpp -o boosting/gbdt_model_text.o
In file included from ./include/LightGBM/utils/common.h:12,
from ./include/LightGBM/config.h:23,
from boosting/gbdt_model_text.cpp:5:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c boosting/gbdt_prediction.cpp -o boosting/gbdt_prediction.o
In file included from ./include/GPBoost/sparse_matrix_utils.h:13,
from ./include/GPBoost/cov_fcts.h:14,
from ./include/GPBoost/re_comp.h:13,
from ./include/GPBoost/re_model_template.h:15,
from ./include/GPBoost/re_model.h:13,
from ./include/LightGBM/objective_function.h:9,
from boosting/gbdt_prediction.cpp:6:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c boosting/prediction_early_stop.cpp -o boosting/prediction_early_stop.o
In file included from boosting/prediction_early_stop.cpp:7:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c io/bin.cpp -o io/bin.o
In file included from ./include/LightGBM/utils/common.h:12,
from ./include/LightGBM/bin.h:9,
from io/bin.cpp:5:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c io/config.cpp -o io/config.o
In file included from ./include/LightGBM/utils/common.h:12,
from ./include/LightGBM/config.h:23,
from io/config.cpp:6:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c io/config_auto.cpp -o io/config_auto.o
In file included from ./include/LightGBM/utils/common.h:12,
from ./include/LightGBM/config.h:23,
from io/config_auto.cpp:9:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c io/dataset.cpp -o io/dataset.o
In file included from ./include/LightGBM/utils/common.h:12,
from ./include/LightGBM/config.h:23,
from ./include/LightGBM/dataset.h:8,
from io/dataset.cpp:6:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c io/dataset_loader.cpp -o io/dataset_loader.o
In file included from ./include/LightGBM/utils/common.h:12,
from ./include/LightGBM/config.h:23,
from ./include/LightGBM/dataset.h:8,
from ./include/LightGBM/dataset_loader.h:8,
from io/dataset_loader.cpp:5:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c io/file_io.cpp -o io/file_io.o
In file included from io/file_io.cpp:8:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c io/json11.cpp -o io/json11.o
In file included from io/json11.cpp:23:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c io/metadata.cpp -o io/metadata.o
In file included from ./include/LightGBM/utils/common.h:12,
from ./include/LightGBM/config.h:23,
from ./include/LightGBM/dataset.h:8,
from io/metadata.cpp:6:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c io/parser.cpp -o io/parser.o
In file included from ./include/LightGBM/utils/common.h:12,
from ./include/LightGBM/config.h:23,
from ./include/LightGBM/dataset.h:8,
from io/parser.hpp:8,
from io/parser.cpp:5:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c io/train_share_states.cpp -o io/train_share_states.o
In file included from ./include/LightGBM/utils/common.h:12,
from ./include/LightGBM/bin.h:9,
from ./include/LightGBM/train_share_states.h:8,
from io/train_share_states.cpp:7:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c io/tree.cpp -o io/tree.o
In file included from ./include/LightGBM/utils/common.h:12,
from ./include/LightGBM/config.h:23,
from ./include/LightGBM/dataset.h:8,
from ./include/LightGBM/tree.h:8,
from io/tree.cpp:5:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c metric/dcg_calculator.cpp -o metric/dcg_calculator.o
In file included from ./include/LightGBM/utils/common.h:12,
from ./include/LightGBM/config.h:23,
from ./include/LightGBM/metric.h:9,
from metric/dcg_calculator.cpp:5:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c metric/metric.cpp -o metric/metric.o
In file included from ./include/LightGBM/utils/common.h:12,
from ./include/LightGBM/config.h:23,
from ./include/LightGBM/metric.h:9,
from metric/metric.cpp:6:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c objective/objective_function.cpp -o objective/objective_function.o
In file included from ./include/GPBoost/sparse_matrix_utils.h:13,
from ./include/GPBoost/cov_fcts.h:14,
from ./include/GPBoost/re_comp.h:13,
from ./include/GPBoost/re_model_template.h:15,
from ./include/GPBoost/re_model.h:13,
from ./include/LightGBM/objective_function.h:9,
from objective/objective_function.cpp:6:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c network/ifaddrs_patch.cpp -o network/ifaddrs_patch.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c network/linker_topo.cpp -o network/linker_topo.o
In file included from ./include/LightGBM/utils/common.h:12,
from ./include/LightGBM/config.h:23,
from ./include/LightGBM/network.h:8,
from network/linker_topo.cpp:5:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c network/linkers_mpi.cpp -o network/linkers_mpi.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c network/linkers_socket.cpp -o network/linkers_socket.o
In file included from ./include/LightGBM/utils/common.h:12,
from ./include/LightGBM/config.h:23,
from network/linkers_socket.cpp:7:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c network/network.cpp -o network/network.o
In file included from ./include/LightGBM/utils/common.h:12,
from ./include/LightGBM/config.h:23,
from ./include/LightGBM/network.h:8,
from network/network.cpp:5:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c treelearner/data_parallel_tree_learner.cpp -o treelearner/data_parallel_tree_learner.o
In file included from ./include/LightGBM/utils/common.h:12,
from ./include/LightGBM/config.h:23,
from ./include/LightGBM/network.h:8,
from treelearner/parallel_tree_learner.h:8,
from treelearner/data_parallel_tree_learner.cpp:9:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c treelearner/feature_parallel_tree_learner.cpp -o treelearner/feature_parallel_tree_learner.o
In file included from ./include/LightGBM/utils/common.h:12,
from ./include/LightGBM/config.h:23,
from ./include/LightGBM/network.h:8,
from treelearner/parallel_tree_learner.h:8,
from treelearner/feature_parallel_tree_learner.cpp:8:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c treelearner/gpu_tree_learner.cpp -o treelearner/gpu_tree_learner.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c treelearner/linear_tree_learner.cpp -o treelearner/linear_tree_learner.o
In file included from ./include/LightGBM/utils/common.h:12,
from ./include/LightGBM/config.h:23,
from ./include/LightGBM/dataset.h:8,
from treelearner/serial_tree_learner.h:8,
from treelearner/linear_tree_learner.h:14,
from treelearner/linear_tree_learner.cpp:5:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c treelearner/serial_tree_learner.cpp -o treelearner/serial_tree_learner.o
In file included from ./include/LightGBM/utils/common.h:12,
from ./include/LightGBM/config.h:23,
from ./include/LightGBM/dataset.h:8,
from treelearner/serial_tree_learner.h:8,
from treelearner/serial_tree_learner.cpp:6:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c treelearner/tree_learner.cpp -o treelearner/tree_learner.o
In file included from ./include/LightGBM/utils/common.h:12,
from ./include/LightGBM/config.h:23,
from ./include/LightGBM/tree_learner.h:9,
from treelearner/tree_learner.cpp:5:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c treelearner/voting_parallel_tree_learner.cpp -o treelearner/voting_parallel_tree_learner.o
In file included from ./include/LightGBM/utils/common.h:12,
from treelearner/voting_parallel_tree_learner.cpp:5:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c c_api.cpp -o c_api.o
In file included from ./include/GPBoost/sparse_matrix_utils.h:13,
from ./include/GPBoost/cov_fcts.h:14,
from ./include/GPBoost/re_comp.h:13,
from ./include/GPBoost/re_model_template.h:15,
from ./include/GPBoost/re_model.h:13,
from c_api.cpp:12:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c gpboost_R.cpp -o gpboost_R.o
In file included from gpboost_R.cpp:7:
gpboost_R.h:12:9: warning: "R_NO_REMAP" redefined
12 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c re_model.cpp -o re_model.o
In file included from ./include/GPBoost/sparse_matrix_utils.h:13,
from ./include/GPBoost/cov_fcts.h:14,
from ./include/GPBoost/re_comp.h:13,
from ./include/GPBoost/re_model_template.h:15,
from ./include/GPBoost/re_model.h:13,
from re_model.cpp:9:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c sparse_matrix_utils.cpp -o sparse_matrix_utils.o
In file included from ./include/GPBoost/sparse_matrix_utils.h:13,
from sparse_matrix_utils.cpp:9:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c GP_utils.cpp -o GP_utils.o
In file included from ./include/GPBoost/GP_utils.h:14,
from GP_utils.cpp:9:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c DF_utils.cpp -o DF_utils.o
In file included from DF_utils.cpp:10:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c Vecchia_utils.cpp -o Vecchia_utils.o
In file included from ./include/GPBoost/sparse_matrix_utils.h:13,
from ./include/GPBoost/cov_fcts.h:14,
from ./include/GPBoost/re_comp.h:13,
from ./include/GPBoost/Vecchia_utils.h:13,
from Vecchia_utils.cpp:9:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fopenmp -pthread -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c CG_utils.cpp -o CG_utils.o
In file included from ./include/GPBoost/sparse_matrix_utils.h:13,
from ./include/GPBoost/cov_fcts.h:14,
from ./include/GPBoost/re_comp.h:13,
from ./include/GPBoost/CG_utils.h:13,
from CG_utils.cpp:9:
./include/LightGBM/utils/log.h:20:9: warning: "R_NO_REMAP" redefined
20 | #define R_NO_REMAP
| ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cs_spsolve.c -o cs_spsolve.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cs_reach.c -o cs_reach.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -DEIGEN_MPL2_ONLY -DMM_PREFETCH=1 -DMM_MALLOC=1 -DUSE_SOCKET -DLGB_R_BUILD -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cs_dfs.c -o cs_dfs.o
g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o gpboost.so boosting/boosting.o boosting/gbdt.o boosting/gbdt_model_text.o boosting/gbdt_prediction.o boosting/prediction_early_stop.o io/bin.o io/config.o io/config_auto.o io/dataset.o io/dataset_loader.o io/file_io.o io/json11.o io/metadata.o io/parser.o io/train_share_states.o io/tree.o metric/dcg_calculator.o metric/metric.o objective/objective_function.o network/ifaddrs_patch.o network/linker_topo.o network/linkers_mpi.o network/linkers_socket.o network/network.o treelearner/data_parallel_tree_learner.o treelearner/feature_parallel_tree_learner.o treelearner/gpu_tree_learner.o treelearner/linear_tree_learner.o treelearner/serial_tree_learner.o treelearner/tree_learner.o treelearner/voting_parallel_tree_learner.o c_api.o gpboost_R.o re_model.o sparse_matrix_utils.o GP_utils.o DF_utils.o Vecchia_utils.o CG_utils.o cs_spsolve.o cs_reach.o cs_dfs.o -fopenmp -pthread
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/gpboost/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/gpboost/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/gpboost/src'
installing to /data/gannet/ripley/R/packages/tests-devel/gpboost.Rcheck/00LOCK-gpboost/00new/gpboost/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gpboost)