* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/geostatsp.Rcheck’
* using R Under development (unstable) (2025-12-12 r89153)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
    GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘geostatsp/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘geostatsp’ version ‘2.0.8’
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: ‘RandomFields’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geostatsp’ can be installed ... [68s/214s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/geostatsp-00install.html' for details.
* used C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [15s/45s] OK
* checking whether the package can be loaded with stated dependencies ... [14s/29s] OK
* checking whether the package can be unloaded cleanly ... [13s/26s] OK
* checking whether the namespace can be loaded with stated dependencies ... [13s/19s] OK
* checking whether the namespace can be unloaded cleanly ... [14s/38s] OK
* checking loading without being on the library search path ... [14s/42s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [86s/232s] OK
* checking Rd files ... [2s/28s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [14s/28s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [0m/30m] ERROR
Running examples in ‘geostatsp-Ex.R’ failed
The error most likely occurred in:

> ### Name: RFsimulate
> ### Title: Simulation of Random Fields
> ### Aliases: RFsimulate modelRandomFields RFsimulate RFsimulate-methods
> ###   RFsimulate,ANY,SpatRaster-method RFsimulate,numeric,SpatRaster-method
> ###   RFsimulate,numeric,SpatVector-method
> ###   RFsimulate,RMmodel,SpatVector-method
> ###   RFsimulate,RMmodel,SpatRaster-method
> ###   RFsimulate,matrix,SpatRaster-method
> ###   RFsimulate,matrix,SpatVector-method RFsimulate,data.frame,ANY-method
> ### Keywords: spatial
> 
> ### ** Examples
> 
> library('geostatsp')
> 
> # exclude this line to use the RandomFields package
> options(useRandomFields = FALSE)
> 
> model1 <- c(var=5, range=1,shape=0.5)
> 
> 
> myraster = rast(nrows=20,ncols=30,extent = ext(0,6,0,4), 
+ 	crs="+proj=utm +zone=17 +datum=NAD27 +units=m +no_defs")
> 
> set.seed(0) 
> 
> simu <- RFsimulate(model1, x=myraster, n=3)
install the RandomFields package for faster simulations
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [0m/90m] ERROR
  Running ‘RFsimulate.R’ [90m/85m]
  Running ‘krige.R’ [23s/83s]
  Running ‘lgcp.R’ [69s/157s]
  Running ‘lgm.R’ [20s/60s]
  Running ‘lgmRaster.R’ [0s/20s]
  Running ‘likfitLgm.R’
Running the tests in ‘tests/RFsimulate.R’ failed.
Complete output:
  > library("geostatsp")
  Loading required package: Matrix
  Loading required package: terra
  terra 1.8.86
  > 
  > model <- c(var=5, range=20,shape=0.5)
  > 
  > # any old crs
  > theCrs = "+proj=utm +zone=17 +datum=NAD27 +units=m +no_defs"
  > 
  > # don't test using the randomFields package, it's currently broken on some R builds
  > options(useRandomFields = FALSE)
  > 
  >   myraster = rast(nrows=20,ncols=20,extent = ext(100,110,100,110), 
  +     crs=theCrs)
  > 
  > set.seed(0)
  > simu = RFsimulate(model = rbind(a=model, b=model+0.1), 
  +   x=myraster, n=4
  + )
Running the tests in ‘tests/lgm.R’ failed.
Complete output:
  > library("geostatsp")
  Loading required package: Matrix
  Loading required package: terra
  terra 1.8.86
  > data("swissRain")
  > swissRain = unwrap(swissRain)
  > swissAltitude= unwrap(swissAltitude)
  > swissLandType = unwrap(swissLandType)
  > 
  > bob = function(x) {
  + 	thepar = x$param
  + 	pdf(tempfile("lgm", tmpdir=".", fileext=".pdf"))
  + 	plot(x$predict[["predict"]], main=
  + 					paste(
  + 							paste(names(thepar), thepar, sep="="),
  + 							collapse=", "),cex.main=0.3
  + 	)
  + 	dev.off()
  + }
  > 
  > 
  >   
  >   # specify formula name of raster layer
  >   swissFit = lgm(data=swissRain[1:60,], formula=rain~ CHE_alt,
  +   		grid=80, covariates=swissAltitude,
  +   		shape=2,  fixShape=TRUE, 
  +   		boxcox=0.5, fixBoxcox=TRUE, 
  +   		aniso=TRUE)	
  > names(swissFit)
  [1] "predict"    "optim"      "betaHat"    "varParam"   "parameters"
  [6] "data"       "model"      "summary"   
  > swissFit$summary[,1:4]
                        estimate       stdErr      ci0.005      ci0.995
  (Intercept)        5.539667532 1.5186552399  1.627870863 9.451464e+00
  CHE_alt            0.001035103 0.0005719224 -0.000438072 2.508277e-03
  sdNugget           0.968107658           NA  0.641881115 1.460134e+00
  sdSpatial          3.151230623           NA  1.493616604 6.648463e+00
  range/1000        46.171859919           NA 17.631646763 1.209099e+02
  shape              2.000000000           NA           NA           NA
  anisoRatio         8.126224277           NA  2.494065801 2.647706e+01
  anisoAngleRadians  0.642065353           NA  0.505367946 7.787628e-01
  anisoAngleDegrees 36.787634916           NA 28.955450418 4.461982e+01
  boxcox             0.500000000           NA           NA           NA
  > bob(swissFit)
  
  Execution halted
Running the tests in ‘tests/lgmRaster.R’ failed.
Complete output:
  > #+ setup
  > library('geostatsp')
  Loading required package: Matrix
  Loading required package: terra
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [7m/13m] OK
* checking PDF version of manual ... [11s/16s] OK
* checking HTML version of manual ... [5s/12s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 ERRORs