• using R Under development (unstable) (2024-11-07 r87302)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (GCC) 14.2.0     GNU Fortran (GCC) 14.2.0
• running under: Fedora Linux 36 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘ff/DESCRIPTION’ ... OK
• this is package ‘ff’ version ‘4.5.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘ff’ can be installed ... [87s/117s] OK See the install log for details.
• used C compiler: ‘gcc-14 (GCC) 14.2.0’
• used C++ compiler: ‘g++-14 (GCC) 14.2.0’
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [49s/61s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in shell scripts ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [18s/25s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... ERROR   Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > test_check("ff")   Loading required package: ff   Loading required package: bit      Attaching package: 'bit'      The following object is masked from 'package:base':          xor      Attaching package ff   - getOption("fftempdir")=="/tmp/RtmpicKCE8/working_dir/RtmpOLqdbJ/ff"      - getOption("ffextension")=="ff"      - getOption("ffdrop")==TRUE      - getOption("fffinonexit")==TRUE      - getOption("ffpagesize")==65536      - getOption("ffcaching")=="mmnoflush" -- consider "ffeachflush" if your system stalls on large writes      - getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system      - getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system         Attaching package: 'ff'      The following objects are masked from 'package:utils':          write.csv, write.csv2      The following objects are masked from 'package:base':          is.factor, is.ordered          *** caught segfault ***   address 0x1, cause 'memory not mapped'      Traceback:    1: as.integer.bit(bit())    2: as.integer(bit())    3: eval_bare(expr, quo_get_env(quo))    4: quasi_label(enquo(expected), expected.label, arg = "expected")    5: expect_equal(b, as.integer(bit()))    6: eval(code, test_env)    7: eval(code, test_env)    8: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)    9: doTryCatch(return(expr), name, parentenv, handler)   10: tryCatchOne(expr, names, parentenv, handlers[[1L]])   11: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])   12: doTryCatch(return(expr), name, parentenv, handler)   13: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])   14: tryCatchList(expr, classes, parentenv, handlers)   15: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })   16: test_code(desc, code, env = parent.frame(), default_reporter = local_interactive_reporter())   17: test_that("Indexing functions can handle zero rows", { b <- integer() expect_equal(b, as.integer(bit())) expect_equal(b, as.integer(as.hi(b))) x <- as.ff(b) expect_equal(length(x), 0) expect_equal(vmode(x), "integer") y <- as.ram(x) expect_equal(length(x), 0) expect_equal(vmode(x), "integer") byte() b <- as.byte(c()) expect_equal(length(b), 0) expect_equal(class(b), "integer") x <- as.ff(b) expect_equal(length(x), 0) expect_equal(vmode(x), "byte") y <- as.ram(x) expect_equal(length(y), 0) expect_equal(vmode(y), "byte") b <- bitwhich() expect_equal(length(b), 0) expect_equal(class(b), c("booltype", "bitwhich")) expect_equal(b, as.bitwhich(NULL)) expect_equal(b, as.bitwhich(logical())) expect_equal(as.hi(b), as.hi(NULL)) expect_equal(b, as.bitwhich(as.hi(b))) b <- bit() expect_equal(length(b), 0) expect_equal(class(b), c("booltype", "bit")) expect_equal(b, as.bit(NULL)) expect_equal(b, as.bit(logical())) expect_equal(as.hi(b), as.hi(NULL)) expect_equal(b, as.bit(as.hi(b))) x <- as.ff(b) expect_equal(length(x), 0) expect_equal(vmode(x), "boolean") b <- logical() expect_equal(b, as.logical(NULL)) expect_equal(b, as.logical(bit())) expect_equal(length(b), 0) expect_equal(as.hi(b), as.hi(NULL)) expect_equal(b, as.logical(as.hi(b))) x <- as.ff(b) expect_equal(length(x), 0) expect_equal(vmode(x), "logical") b <- as.which(integer(), maxindex = 0) expect_equal(length(b), 0) expect_equal(class(b), c("booltype", "which")) expect_equal(b, as.which(bit())) expect_equal(b, as.which(logical())) expect_equal(as.hi(b), as.hi(NULL)) expect_equal(b, as.which(as.hi(b))) x <- as.ff(b) expect_equal(length(x), 0) expect_equal(vmode(x), "integer") h <- as.hi(NULL) expect_equal(h, as.hi(as.which(integer(), maxindex = 0))) expect_equal(h, as.hi(logical())) expect_equal(h, as.hi(bit())) expect_equal(h, as.hi(bitwhich())) h$maxindex <- NA_integer_ expect_equal(h, as.hi(as.which(integer()))) expect_equal(h, as.hi(integer())) expect_equal(h, as.hi(double())) x <- as.ff(1:10) y <- x[as.hi(NULL)] expect_equal(vmode(x), vmode(y)) x <- as.integer(as.hi(c())) expect_equal(length(x), 0) expect_equal(class(x), "integer") x <- as.vmode(c(), "double") expect_equal(length(x), 0) x <- as.vmode(c(), "logical") expect_equal(length(x), 0) x <- as.vmode(c(), "byte") expect_equal(length(x), 0) chunks <- chunk(ff(c())) expect_equal(length(chunks), 0) x <- data.frame(a = c(1, 2), b = c(2, 3)) x <- as.ffdf(x) chunks <- chunk(x) expect_equal(length(chunks), 1) expect_equal(dimnames(x)[[2]], c("a", "b")) ffdfsort(x) x <- data.frame(a = c(1, 2), b = c(2, 3)) x <- x[x$a == 3, ] x <- as.ffdf(x) chunks <- chunk(x) expect_equal(length(chunks), 0) expect_equal(dimnames(x)[[2]], c("a", "b")) ffdfsort(x) expect_equal(nrow(x), 0) x <- ff(c()) y <- ff(c()) x <- x[fforder(x, y)] expect_equal(length(x), 0) x <- ff(c()) x <- ffsort(x) expect_equal(length(x), 0)})   18: eval(code, test_env)   19: eval(code, test_env)   20: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)   21: doTryCatch(return(expr), name, parentenv, handler)   22: tryCatchOne(expr, names, parentenv, handlers[[1L]])   23: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])   24: doTryCatch(return(expr), name, parentenv, handler)   25: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])   26: tryCatchList(expr, classes, parentenv, handlers)   27: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })   28: test_code(test = NULL, code = exprs, env = env, default_reporter = StopReporter$new())   29: source_file(path, env = env(env), desc = desc, error_call = error_call)   30: FUN(X[[i]], ...)   31: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)   32: doTryCatch(return(expr), name, parentenv, handler)   33: tryCatchOne(expr, names, parentenv, handlers[[1L]])   34: tryCatchList(expr, classes, parentenv, handlers)   35: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL})   36: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call))   37: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, error_call = error_call)   38: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel)   39: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed")   40: test_check("ff")   An irrecoverable exception occurred. R is aborting now ...
• checking PDF version of manual ... [18s/27s] OK
• checking HTML version of manual ... [10s/16s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR