* installing *source* package ‘event’ ...
** package ‘event’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (GCC) 14.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/event/src'
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c event_init.c -o event_init.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c ksurvb.c -o ksurvb.o
ksurvb.c: In function 'ksurvb':
ksurvb.c:213:18: warning: 'omega' may be used uninitialized [-Wmaybe-uninitialized]
213 | case 7: a=omega*a1; break;
| ~^~~~~~~~~
ksurvb.c:51:33: note: 'omega' was declared here
51 | double a,a1,b,b1,delta,lambda,omega,om,beta,bt,h,yy,tmp,ly,plap,intercept,
| ^~~~~
ksurvb.c:181:41: warning: 'family' may be used uninitialized [-Wmaybe-uninitialized]
181 | if(*pfamily)*like-=(c>0)*(family-c)*log(b1)-a*(pow(b1,family)-pow(b,family))/family;
| ~~~~~~~^~~
ksurvb.c:52:5: note: 'family' was declared here
52 | family;
| ^~~~~~
ksurvb.c:158:84: warning: 'intercept' may be used uninitialized [-Wmaybe-uninitialized]
158 | h=-yy/lambda+(1/(lambda*bt)+1)*log((lambda+intercept)/(lambda+intercept*exp(-bt*yy)));
| ~~~~~~~~~^~~~~~~~~~~~
ksurvb.c:51:67: note: 'intercept' was declared here
51 | double a,a1,b,b1,delta,lambda,omega,om,beta,bt,h,yy,tmp,ly,plap,intercept,
| ^~~~~~~~~
ksurvb.c:98:20: warning: 'Rf_beta' may be used uninitialized [-Wmaybe-uninitialized]
98 | else bt+=beta;}
In file included from ksurvb.c:43:
/data/gannet/ripley/R/R-devel/include/Rmath.h:212:25: note: 'Rf_beta' was declared here
212 | #define beta Rf_beta
| ^~~~~~~
ksurvb.c:51:42: note: in expansion of macro 'beta'
51 | double a,a1,b,b1,delta,lambda,omega,om,beta,bt,h,yy,tmp,ly,plap,intercept,
| ^~~~
ksurvb.c:173:17: warning: 'lambda' may be used uninitialized [-Wmaybe-uninitialized]
173 | tmp=exp(-fabs(ly-bt)/lambda)/2;
| ^~~~~~~~~~~~~~~~~~~~~~~~
ksurvb.c:51:26: note: 'lambda' was declared here
51 | double a,a1,b,b1,delta,lambda,omega,om,beta,bt,h,yy,tmp,ly,plap,intercept,
| ^~~~~~
ksurvb.c:174:26: warning: 'ly' may be used uninitialized [-Wmaybe-uninitialized]
174 | b1+=ly<bt?tmp:1-tmp;
| ~~~~~~~~~^~~~~~
ksurvb.c:51:59: note: 'ly' was declared here
51 | double a,a1,b,b1,delta,lambda,omega,om,beta,bt,h,yy,tmp,ly,plap,intercept,
| ^~
ksurvb.c:174:26: warning: 'bt' may be used uninitialized [-Wmaybe-uninitialized]
174 | b1+=ly<bt?tmp:1-tmp;
| ~~~~~~~~~^~~~~~
ksurvb.c:51:47: note: 'bt' was declared here
51 | double a,a1,b,b1,delta,lambda,omega,om,beta,bt,h,yy,tmp,ly,plap,intercept,
| ^~
ksurvb.c:178:71: warning: 'h' may be used uninitialized [-Wmaybe-uninitialized]
178 | *like-=(c>1?lgammafn(a1)-lgammafn(a)-lgammafn(c+1):c*log(a))+c*h;
| ~^~
ksurvb.c:51:50: note: 'h' was declared here
51 | double a,a1,b,b1,delta,lambda,omega,om,beta,bt,h,yy,tmp,ly,plap,intercept,
| ^
ksurvb.c:217:21: warning: 'om' may be used uninitialized [-Wmaybe-uninitialized]
217 | case 2: b=om*b1+(1-om)*delta; break;
| ~~^~~
ksurvb.c:51:39: note: 'om' was declared here
51 | double a,a1,b,b1,delta,lambda,omega,om,beta,bt,h,yy,tmp,ly,plap,intercept,
| ^~
ksurvb.c: In function 'frailb':
ksurvb.c:340:68: warning: 'intercept' may be used uninitialized [-Wmaybe-uninitialized]
340 | l1+=-yy/lambda+log((lambda+intercept)/(lambda+intercept*exp(-bt*yy)))/((lambda*bt)+1);
| ~~~~~~~~~^~~~~~~~~~~~
ksurvb.c:233:55: note: 'intercept' was declared here
233 | double b1,delta,lambda,beta,bt,l1,yy,nb,ly,plap,tmp,intercept,H,btp,res;
| ^~~~~~~~~
ksurvb.c:257:9: warning: 'Rf_beta' may be used uninitialized [-Wmaybe-uninitialized]
257 | nb/=beta;}
/data/gannet/ripley/R/R-devel/include/Rmath.h:212:25: note: 'Rf_beta' was declared here
212 | #define beta Rf_beta
| ^~~~~~~
ksurvb.c:233:26: note: in expansion of macro 'beta'
233 | double b1,delta,lambda,beta,bt,l1,yy,nb,ly,plap,tmp,intercept,H,btp,res;
| ^~~~
ksurvb.c:355:17: warning: 'lambda' may be used uninitialized [-Wmaybe-uninitialized]
355 | tmp=exp(-fabs(ly-bt)/lambda)/2;
| ^~~~~~~~~~~~~~~~~~~~~~~~
ksurvb.c:233:19: note: 'lambda' was declared here
233 | double b1,delta,lambda,beta,bt,l1,yy,nb,ly,plap,tmp,intercept,H,btp,res;
| ^~~~~~
ksurvb.c:266:25: warning: 'yy' may be used uninitialized [-Wmaybe-uninitialized]
266 | if(*model>=5)ly=log(yy);
| ^~~~~~~
ksurvb.c:233:37: note: 'yy' was declared here
233 | double b1,delta,lambda,beta,bt,l1,yy,nb,ly,plap,tmp,intercept,H,btp,res;
| ^~
ksurvb.c:356:24: warning: 'ly' may be used uninitialized [-Wmaybe-uninitialized]
356 | H=ly<bt?tmp:1-tmp;
| ~~~~~~~~~^~~~~~
ksurvb.c:233:43: note: 'ly' was declared here
233 | double b1,delta,lambda,beta,bt,l1,yy,nb,ly,plap,tmp,intercept,H,btp,res;
| ^~
ksurvb.c:284:20: warning: 'bt' may be used uninitialized [-Wmaybe-uninitialized]
284 | bt=exp(log(bt)+exp(p[*nccov+*birth+*tvc+2]*y[nm])*res);
| ^~~~~~~
ksurvb.c:233:31: note: 'bt' was declared here
233 | double b1,delta,lambda,beta,bt,l1,yy,nb,ly,plap,tmp,intercept,H,btp,res;
| ^~
ksurvb.c:390:11: warning: 'H' may be used uninitialized [-Wmaybe-uninitialized]
390 | b1+=H;
| ~~^~~
ksurvb.c:233:65: note: 'H' was declared here
233 | double b1,delta,lambda,beta,bt,l1,yy,nb,ly,plap,tmp,intercept,H,btp,res;
| ^
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c ksurvg.c -o ksurvg.o
ksurvg.c: In function 'ksurvg':
ksurvg.c:209:18: warning: 'omega' may be used uninitialized [-Wmaybe-uninitialized]
209 | case 7: a=omega*a1; break;
| ~^~~~~~~~~
ksurvg.c:46:32: note: 'omega' was declared here
46 | double a,a1,b,H,delta,lambda,omega,om,beta,bt,l1,yy,ly,plap,tmp,
| ^~~~~
ksurvg.c:148:72: warning: 'intercept' may be used uninitialized [-Wmaybe-uninitialized]
148 | l1=exp(-yy/lambda)*pow((lambda+intercept)/(lambda+intercept*exp(-bt*yy)),1/(lambda*bt)+1);
| ~~~~~~~~~^~~~~~~~~~~~
ksurvg.c:47:5: note: 'intercept' was declared here
47 | intercept;
| ^~~~~~~~~
ksurvg.c:88:20: warning: 'Rf_beta' may be used uninitialized [-Wmaybe-uninitialized]
88 | else bt+=beta;}
In file included from ksurvg.c:38:
/data/gannet/ripley/R/R-devel/include/Rmath.h:212:25: note: 'Rf_beta' was declared here
212 | #define beta Rf_beta
| ^~~~~~~
ksurvg.c:46:41: note: in expansion of macro 'beta'
46 | double a,a1,b,H,delta,lambda,omega,om,beta,bt,l1,yy,ly,plap,tmp,
| ^~~~
ksurvg.c:163:17: warning: 'lambda' may be used uninitialized [-Wmaybe-uninitialized]
163 | tmp=exp(-fabs(ly-bt)/lambda)/2;
| ^~~~~~~~~~~~~~~~~~~~~~~~
ksurvg.c:46:25: note: 'lambda' was declared here
46 | double a,a1,b,H,delta,lambda,omega,om,beta,bt,l1,yy,ly,plap,tmp,
| ^~~~~~
ksurvg.c:164:24: warning: 'ly' may be used uninitialized [-Wmaybe-uninitialized]
164 | H=ly<bt?tmp:1-tmp;
| ~~~~~~~~~^~~~~~
ksurvg.c:46:55: note: 'ly' was declared here
46 | double a,a1,b,H,delta,lambda,omega,om,beta,bt,l1,yy,ly,plap,tmp,
| ^~
ksurvg.c:164:24: warning: 'bt' may be used uninitialized [-Wmaybe-uninitialized]
164 | H=ly<bt?tmp:1-tmp;
| ~~~~~~~~~^~~~~~
ksurvg.c:46:46: note: 'bt' was declared here
46 | double a,a1,b,H,delta,lambda,omega,om,beta,bt,l1,yy,ly,plap,tmp,
| ^~
ksurvg.c:169:11: warning: 'H' may be used uninitialized [-Wmaybe-uninitialized]
169 | if(H<1e-20)H=1e-20;
| ^
ksurvg.c:46:17: note: 'H' was declared here
46 | double a,a1,b,H,delta,lambda,omega,om,beta,bt,l1,yy,ly,plap,tmp,
| ^
ksurvg.c:46:49: warning: 'l1' may be used uninitialized [-Wmaybe-uninitialized]
46 | double a,a1,b,H,delta,lambda,omega,om,beta,bt,l1,yy,ly,plap,tmp,
| ^~
ksurvg.c:213:19: warning: 'om' may be used uninitialized [-Wmaybe-uninitialized]
213 | case 2: b=pow(H,-om)*delta; break;
| ^~~~~~~~~~
ksurvg.c:46:38: note: 'om' was declared here
46 | double a,a1,b,H,delta,lambda,omega,om,beta,bt,l1,yy,ly,plap,tmp,
| ^~
gcc-14 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o event.so event_init.o ksurvb.o ksurvg.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/event/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/event/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/event/src'
installing to /data/gannet/ripley/R/packages/tests-devel/event.Rcheck/00LOCK-event/00new/event/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (event)