* installing *source* package ‘emdist’ ...
** this is package ‘emdist’ version ‘0.3-3’
** package ‘emdist’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/emdist/src'
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c dummy.c -o dummy.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c emd-r.c -o emd-r.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c emd-rubner.c -o emd-rubner.o
emd-rubner.c: In function ‘emd_rubner’:
emd-rubner.c:810:20: warning: ‘minI’ may be used uninitialized [-Wmaybe-uninitialized]
  810 |   int i, j, found, minI, minJ;
      |                    ^~~~
emd-rubner.c:810:26: warning: ‘minJ’ may be used uninitialized [-Wmaybe-uninitialized]
  810 |   int i, j, found, minI, minJ;
      |                          ^~~~
In function ‘addBasicVariable’,
    inlined from ‘russel’ at emd-rubner.c:903:7,
    inlined from ‘init’ at emd-rubner.c:451:3,
    inlined from ‘emd_rubner’ at emd-rubner.c:205:7:
emd-rubner.c:1010:21: warning: ‘PrevVMinJ’ may be used uninitialized [-Wmaybe-uninitialized]
 1010 |     PrevVMinJ->Next = PrevVMinJ->Next->Next;  /* REMOVE COLUMN FROM LIST */
      |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
emd-rubner.c: In function ‘emd_rubner’:
emd-rubner.c:814:36: note: ‘PrevVMinJ’ was declared here
  814 |   node1_t *PrevUMinI = PrevUMinI, *PrevVMinJ, *Remember;
      |                                    ^~~~~~~~~
In function ‘isOptimal’,
    inlined from ‘emd_rubner’ at emd-rubner.c:220:8:
emd-rubner.c:626:15: warning: ‘minI’ may be used uninitialized [-Wmaybe-uninitialized]
  626 |    _EnterX->i = minI;
      |    ~~~~~~~~~~~^~~~~~
emd-rubner.c: In function ‘emd_rubner’:
emd-rubner.c:602:13: note: ‘minI’ was declared here
  602 |   int i, j, minI, minJ;
      |             ^~~~
In function ‘isOptimal’,
    inlined from ‘emd_rubner’ at emd-rubner.c:220:8:
emd-rubner.c:627:15: warning: ‘minJ’ may be used uninitialized [-Wmaybe-uninitialized]
  627 |    _EnterX->j = minJ;
      |    ~~~~~~~~~~~^~~~~~
emd-rubner.c: In function ‘emd_rubner’:
emd-rubner.c:602:19: note: ‘minJ’ was declared here
  602 |   int i, j, minI, minJ;
      |                   ^~~~
In function ‘newSol’,
    inlined from ‘emd_rubner’ at emd-rubner.c:224:4:
emd-rubner.c:690:8: warning: ‘LeaveX’ may be used uninitialized [-Wmaybe-uninitialized]
  690 |     if (_RowsX[i] == LeaveX)
      |        ^
emd-rubner.c: In function ‘emd_rubner’:
emd-rubner.c:645:21: note: ‘LeaveX’ was declared here
  645 |     node2_t *CurX, *LeaveX;
      |                     ^~~~~~
emd-rubner.c:254:23: warning: ‘FlowP’ may be used uninitialized [-Wmaybe-uninitialized]
  254 |           FlowP->from = XP->i;
      |           ~~~~~~~~~~~~^~~~~~~
emd-rubner.c:197:11: note: ‘FlowP’ was declared here
  197 |   flow_t *FlowP;
      |           ^~~~~
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o emdist.so dummy.o emd-r.o emd-rubner.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/emdist/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/emdist/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/emdist/src'
installing to /data/gannet/ripley/R/packages/tests-devel/emdist.Rcheck/00LOCK-emdist/00new/emdist/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (emdist)