* installing *source* package ‘eglhmm’ ...
** this is package ‘eglhmm’ version ‘0.1-3’
** package ‘eglhmm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
using Fortran compiler: ‘GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/eglhmm/src'
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c afun.f90 -o afun.o
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c bfun.f90 -o bfun.o
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c delta.f90 -o delta.o
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c derivf.f90 -o derivf.o
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c derivf1.f90 -o derivf1.o
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c derivf2.f90 -o derivf2.o
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c derivf3.f90 -o derivf3.o
derivf3.f90:30:80:
30 | d2f(i,npro+j,npro+k) = (dfdp*h2 + d2fdp*h1**2)*tdm(j,i)*tdm(k,i)
| ^
Warning: ‘d2fdp’ may be used uninitialized [-Wmaybe-uninitialized]
derivf3.f90:30:55:
30 | d2f(i,npro+j,npro+k) = (dfdp*h2 + d2fdp*h1**2)*tdm(j,i)*tdm(k,i)
| ^
note: ‘d2fdp’ was declared here
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c derivf4.f90 -o derivf4.o
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c derivf5.f90 -o derivf5.o
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c derivfab.f90 -o derivfab.o
derivfab.f90:49:77:
49 | d2eaa = d2eaa + aitchk * tk1*tk1*exp(alpha*tk1 + beta*tk2 - xam)
| ^
Warning: ‘d2eaa’ may be used uninitialized [-Wmaybe-uninitialized]
derivfab.f90:29:13:
29 | d2eaa = zero
| ^
note: ‘d2eaa’ was declared here
derivfab.f90:50:77:
50 | d2eab = d2eab + aitchk * tk1*tk2*exp(alpha*tk1 + beta*tk2 - xam)
| ^
Warning: ‘d2eab’ may be used uninitialized [-Wmaybe-uninitialized]
derivfab.f90:30:13:
30 | d2eab = zero
| ^
note: ‘d2eab’ was declared here
derivfab.f90:51:77:
51 | d2ebb = d2ebb + aitchk * tk2*tk2*exp(alpha*tk1 + beta*tk2 - xam)
| ^
Warning: ‘d2ebb’ may be used uninitialized [-Wmaybe-uninitialized]
derivfab.f90:31:13:
31 | d2ebb = zero
| ^
note: ‘d2ebb’ was declared here
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c esttpm.f90 -o esttpm.o
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c gethgl.f90 -o gethgl.o
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c gfun.f90 -o gfun.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c pmf.f90 -o pmf.o
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c prephi.f90 -o prephi.o
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c recurse.f90 -o recurse.o
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c xfun.f90 -o xfun.o
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o eglhmm.so afun.o bfun.o delta.o derivf.o derivf1.o derivf2.o derivf3.o derivf4.o derivf5.o derivfab.o esttpm.o gethgl.o gfun.o init.o pmf.o prephi.o recurse.o xfun.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/eglhmm/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/eglhmm/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/eglhmm/src'
installing to /data/gannet/ripley/R/packages/tests-devel/eglhmm.Rcheck/00LOCK-eglhmm/00new/eglhmm/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (eglhmm)