* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/doolkit.Rcheck’
* using R Under development (unstable) (2025-02-14 r87716)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘doolkit/DESCRIPTION’ ... OK
* this is package ‘doolkit’ version ‘1.42.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘doolkit’ can be installed ... [23s/30s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/doolkit-00install.html' for details.
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [26s/32s] OK
* checking Rd files ... NOTE
checkRd: (-1) dkprofile.Rd:64: Lost braces
    64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) dne.Rd:45: Lost braces
    45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)}
       |                         ^
checkRd: (-1) dne.Rd:47: Lost braces
    47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)}
       |                                ^
checkRd: (-1) inclin.Rd:28: Lost braces
    28 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:43: Lost braces
    43 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) oedist.Rd:45: Lost braces
    45 | \doi{10.1371/journal.pone.0138802}{Guy et al. (2015)}
       |                                   ^
checkRd: (-1) oedist.Rd:47: Lost braces
    47 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)}
       |                               ^
checkRd: (-1) oedist.Rd:49: Lost braces
    49 | \doi{10.1098/rsbl.2019.0671}{Schwartz et al. (2020)}
       |                             ^
checkRd: (-1) opc.Rd:36: Lost braces
    36 | \doi{10.1038/nature05433}{Evans et al. (2007)}
       |                          ^
checkRd: (-1) opcr.Rd:30: Lost braces
    30 | \doi{10.1038/nature10880}{Wilson et al. (2012)}
       |                          ^
checkRd: (-1) rfi.Rd:34: Lost braces
    34 | \doi{10.1016/j.jhevol.2008.08.002}{Boyer (2008)}
       |                                   ^
checkRd: (-1) rfi.Rd:35: Lost braces
    35 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)}
       |                                   ^
checkRd: (-1) rrate.Rd:34: Lost braces
    34 | \doi{10.1002/ajpa.23916}{Thiery et al. (2019)}
       |                         ^
checkRd: (-1) shape.index.Rd:44: Lost braces
    44 | \doi{10.1029/TR013i001p00350}{Horton (1932)}
       |                              ^
checkRd: (-1) shape.index.Rd:46: Lost braces
    46 | \doi{10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2}{Schumm (1956)}
       |                                                    ^
checkRd: (-1) shape.index.Rd:48: Lost braces
    48 | \doi{10.2475/ajs.255.2.138}{Chorley et al. (1957)}
       |                            ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [81s/91s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE